Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I17
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   221   3e-60
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   221   3e-60
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   9.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  221 bits (540), Expect = 3e-60
 Identities = 103/130 (79%), Positives = 112/130 (86%)
 Frame = +3

Query: 24  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 203
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 204 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 383
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 384 XXXXXXXTSL 413
                  TSL
Sbjct: 121 SGGAAGATSL 130



 Score = 28.3 bits (60), Expect = 0.036
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 51  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 230
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 231 LSFWRGNFANVIRYFPTQALNFAFKD 308
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.084
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 111 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 269
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  221 bits (540), Expect = 3e-60
 Identities = 103/130 (79%), Positives = 112/130 (86%)
 Frame = +3

Query: 24  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 203
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 204 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 383
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 384 XXXXXXXTSL 413
                  TSL
Sbjct: 121 SGGAAGATSL 130



 Score = 28.3 bits (60), Expect = 0.036
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 51  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 230
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 231 LSFWRGNFANVIRYFPTQALNFAFKD 308
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.084
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 111 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 269
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 166 AICLLTCWT 140
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 166 AICLLTCWT 140
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 254 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 156
           E+T P  E+T+ + N  E + +T V    +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 168 EDQRYKGI-VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 293
           +DQ+Y+ + V+ + ++ KEQG +S   G     +   P   +N
Sbjct: 665 QDQQYQVVSVEQYQQL-KEQGQISQVGGGIQQNVEVLPENLVN 706


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 38  GEIRHFVRLCPR 3
           G+I H V+ CP+
Sbjct: 82  GDIAHTVKYCPK 93


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 245 W*LRQCHQVLPDSGAQLRFQGQVQA 319
           W L + H+V    G+ ++  G+V A
Sbjct: 187 WDLGKFHRVCTQIGSSMKSVGEVMA 211


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 235 HSGVVTSPM 261
           H GVVTSP+
Sbjct: 232 HQGVVTSPL 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.121    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,255
Number of Sequences: 438
Number of extensions: 1778
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)