Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I16
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   133   7e-33
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   133   7e-33
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   2.0  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   2.7  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   3.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    24   6.2  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   8.2  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   8.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  133 bits (322), Expect = 7e-33
 Identities = 59/79 (74%), Positives = 70/79 (88%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGAASSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 301
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLIVQNRQAQISVVPSAAA 358
           +L +QNRQA +SVVPSA+A
Sbjct: 61  KLTIQNRQAAVSVVPSASA 79


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  133 bits (322), Expect = 7e-33
 Identities = 59/79 (74%), Positives = 70/79 (88%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGAASSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 301
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLIVQNRQAQISVVPSAAA 358
           +L +QNRQA +SVVPSA+A
Sbjct: 61  KLTIQNRQAAVSVVPSASA 79


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 216 ILGAKEDAAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPM 67
           I+   +  + T+ PTHL    L    SN+         NNK+  N+SKP+
Sbjct: 449 IMDLTQPISSTNAPTHLNEDDLNQFTSNISSSSKPRKDNNKTA-NSSKPI 497


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = -3

Query: 261 AMSSPTFFGERPRGPILGAKEDAAPTSPPTHLKLTILISLGSNLGGIVLT-NYCNNKSLY 85
           +MS+P FFG++  G ++         S    L+   +I+   N   ++L  ++ + K L+
Sbjct: 188 SMSNPLFFGDQDNGYVISQSFSLRDPSARGGLRRYAIIATCPNQLDLILRYSFISEKFLH 247

Query: 84  --NNSKPMNLDIKGVQPSKRTKTSAA 13
                +  + + K    S R+KT+A+
Sbjct: 248 IVQFLRISSFNTKNDYSSSRSKTTAS 273


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 141 GSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGVQPSK 34
           GS + G+VL+N    K        + LD+  VQ  K
Sbjct: 92  GSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 162 LTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 58
           L++ I      GG+V    C +  + N  K  NLD
Sbjct: 693 LSLGIDAAKRAGGVVEATMCYSGDMLNPKKKYNLD 727


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 295  DLETLPVTSGFSDV 254
            DLE +PV +GFS+V
Sbjct: 970  DLEKVPVVTGFSEV 983


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 334 NLRLSVLHYQLDRDLETLPVTSGFSDVITNL 242
           N  + +L++  DR     P+  G +DVITNL
Sbjct: 660 NTAIDILNFVTDR----FPLLKGSTDVITNL 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,066
Number of Sequences: 5004
Number of extensions: 26173
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)