Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I16
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   138   1e-33
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    29   0.98 
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    26   9.1  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  138 bits (333), Expect = 1e-33
 Identities = 62/79 (78%), Positives = 71/79 (89%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGAASSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 301
           MPPKFDP EIKIV LRCVGGEVGA S+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 302 QLIVQNRQAQISVVPSAAA 358
           +L +QNR A+I VVPSAA+
Sbjct: 61  KLTIQNRVAKIDVVPSAAS 79


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 261 AMSSPTFFGERPRGPILGAKEDAAPTSPPTHL--KLTILISLGSNLGGIVLTNYCNNKSL 88
           A S P     +   P   + +DA PTSPP  +   LT  +    +    +  +Y     L
Sbjct: 630 ATSQPAPLPCKSANPTEDSSQDAPPTSPPPRISDSLTAFLEAQQDFNDYIDAHYKEKTQL 689

Query: 87  YNNSKPMNLDIKGVQPSK 34
                 +NL+I G+ P +
Sbjct: 690 LK----VNLNIHGMSPER 703


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 159 TILISLGSNLGGIVLTNYCNNKSLYNNSKPMN 64
           T+  S+G N   I L ++    SLY+N+K  N
Sbjct: 489 TLPYSMGKNSTSIWLRSFLYQSSLYHNNKGFN 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,877,271
Number of Sequences: 27780
Number of extensions: 147358
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)