Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I15
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 157 7e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 156 1e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 156 1e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 93 2e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 89 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 48 7e-07
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 1.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.3
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 2.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.1
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.1
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 4.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 4.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 4.1
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 7.1
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 7.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 24 9.4
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 24 9.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 24 9.4
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 24 9.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 24 9.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 157 bits (380), Expect = 7e-40
Identities = 73/100 (73%), Positives = 88/100 (88%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQAR 164
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTT 204
Score = 50.4 bits (115), Expect = 9e-08
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KY VT+IDAPGHRDFIKNMITGT
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGT 106
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 156 bits (379), Expect = 1e-39
Identities = 72/100 (72%), Positives = 88/100 (88%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQAR 164
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTT 204
Score = 50.4 bits (115), Expect = 9e-08
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KY VT+IDAPGHRDFIKNMITGT
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGT 106
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 156 bits (379), Expect = 1e-39
Identities = 72/100 (72%), Positives = 88/100 (88%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++R
Sbjct: 107 SQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQAR 164
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
FEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 165 FEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTT 204
Score = 50.4 bits (115), Expect = 9e-08
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KY VT+IDAPGHRDFIKNMITGT
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGT 106
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 92.7 bits (220), Expect = 2e-20
Identities = 43/97 (44%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R
Sbjct: 338 SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 397
Query: 264 FEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNM 368
++E ++S +++++ GYN V ++P+S + G N+
Sbjct: 398 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 434
Score = 29.5 bits (63), Expect = 0.19
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 26 TIIDAPGHRDFIKNMITG 79
+++DAPGH+ ++ NMI G
Sbjct: 319 SLLDAPGHKGYVTNMING 336
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.0 bits (211), Expect = 2e-19
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE R
Sbjct: 277 SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDR 334
Query: 264 FEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 374
F+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
Score = 32.7 bits (71), Expect = 0.020
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGTVSS 91
F K I DAPGHRDFI MI G S+
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSA 279
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 47.6 bits (108), Expect = 7e-07
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +3
Query: 93 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEE 272
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E
Sbjct: 141 DGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEME 193
Query: 273 IKKEVSSY 296
+++ +S Y
Sbjct: 194 MRELLSEY 201
Score = 33.9 bits (74), Expect = 0.009
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 32 IDAPGHRDFIKNMITGTVS 88
+D PGH D+IKNMITG +
Sbjct: 121 VDCPGHADYIKNMITGAAT 139
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 1.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 64 EHDHWNRLKLTAPCLLSPLVLVNSKP 141
EHD + L LTA C+ L L N KP
Sbjct: 166 EHDPYKILDLTAECISLMLTLGNVKP 191
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 235 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 336
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 58 HQEHDHWNRLKLTAPCLLSPLVLVNSKP 141
H HDH + L+LT SPL L SKP
Sbjct: 242 HVHHDHHSMLRLTREISASPLHL--SKP 267
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 159 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 299
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 237 TEPPYSESRFEEIKKEVSSYIKK 305
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 17 YYVTIIDAPGHRDF 58
Y + IID PGH DF
Sbjct: 145 YNINIIDTPGHIDF 158
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 17 YYVTIIDAPGHRDF 58
Y + +ID+PGH DF
Sbjct: 94 YLINLIDSPGHVDF 107
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 292 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 116
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 115 ATISTAQS 92
+++++ S
Sbjct: 816 NSVTSSTS 823
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 23 VTIIDAPGHRDFIKN 67
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 7.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 43 WTQRFHQEHDHWN 81
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 238 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 375
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 17 YYVTIIDAPGHRDF 58
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +3
Query: 231 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 353
DS P + + + + YI+++G P + I+ W
Sbjct: 513 DSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASW 553
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 245 WLSGVHFVYSYNQLLDSECE 186
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 12 ANTMSPSSTLLDTEISSRT*SLEPSQAD 95
A T+ L EISS T L PSQ+D
Sbjct: 142 AITIDVDGHSLQNEISSSTDKLSPSQSD 169
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 17 YYVTIIDAPGHRDF 58
Y + +ID PGH DF
Sbjct: 124 YLLNLIDTPGHVDF 137
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 17 YYVTIIDAPGHRDF 58
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,132
Number of Sequences: 5004
Number of extensions: 31047
Number of successful extensions: 164
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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