Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I15
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 171 2e-43
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 171 2e-43
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 95 1e-21
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 97 5e-21
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 96 7e-21
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 96 7e-21
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 85 2e-17
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 42 1e-04
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 42 1e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.002
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.002
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.002
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.091
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.28
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 4.5
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 4.5
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 27 4.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 4.5
Z83113-6|CAB05542.1| 120|Caenorhabditis elegans Hypothetical pr... 27 6.0
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 6.0
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 171 bits (415), Expect = 2e-43
Identities = 82/100 (82%), Positives = 89/100 (89%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEAR 166
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 206
Score = 55.2 bits (127), Expect = 1e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KYY+TIIDAPGHRDFIKNMITGT
Sbjct: 80 FETAKYYITIIDAPGHRDFIKNMITGT 106
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 171 bits (415), Expect = 2e-43
Identities = 82/100 (82%), Positives = 89/100 (89%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEAR 166
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
F EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 206
Score = 55.2 bits (127), Expect = 1e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KYY+TIIDAPGHRDFIKNMITGT
Sbjct: 80 FETAKYYITIIDAPGHRDFIKNMITGT 106
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 94.7 bits (225), Expect(2) = 1e-21
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3
Query: 207 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 383
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 172
Score = 55.2 bits (127), Expect = 1e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KYY+TIIDAPGHRDFIKNMITGT
Sbjct: 80 FETAKYYITIIDAPGHRDFIKNMITGT 106
Score = 24.6 bits (51), Expect(2) = 1e-21
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 84 SQADCAVLIVA 116
SQADCAVL+VA
Sbjct: 107 SQADCAVLVVA 117
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 96.7 bits (230), Expect = 5e-21
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
+QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E R
Sbjct: 209 NQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEER 268
Query: 264 FEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 359
F+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 269 FKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
Score = 35.1 bits (77), Expect = 0.017
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 14 KYYVTIIDAPGHRDFIKNMITG 79
K + TI+DAPGH+ F+ NMI G
Sbjct: 186 KRHFTILDAPGHKSFVPNMIVG 207
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 96.3 bits (229), Expect = 7e-21
Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R
Sbjct: 270 SQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDR 327
Query: 264 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 374
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 328 FDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK 363
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 23 VTIIDAPGHRDFIKNMITGT 82
+ ++DAPGH+DFI NMITGT
Sbjct: 250 IVLLDAPGHKDFISNMITGT 269
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 96.3 bits (229), Expect = 7e-21
Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R
Sbjct: 288 SQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDR 345
Query: 264 FEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 374
F+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 346 FDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK 381
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 23 VTIIDAPGHRDFIKNMITGT 82
+ ++DAPGH+DFI NMITGT
Sbjct: 268 IVLLDAPGHKDFISNMITGT 287
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 85.0 bits (201), Expect = 2e-17
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R
Sbjct: 107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRR 163
Query: 264 FEEIKK 281
+ I++
Sbjct: 164 SDTIQR 169
Score = 55.2 bits (127), Expect = 1e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITGT 82
F KYY+TIIDAPGHRDFIKNMITGT
Sbjct: 80 FETAKYYITIIDAPGHRDFIKNMITGT 106
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 42.3 bits (95), Expect = 1e-04
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 130 SQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDD 178
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFV 338
+ ++ E + G+N A +
Sbjct: 179 LDLVEMEARELLSLHGFNGDATPVI 203
Score = 33.1 bits (72), Expect = 0.069
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2
Query: 35 DAPGHRDFIKNMITGT 82
D PGH DFIKNMI GT
Sbjct: 114 DCPGHSDFIKNMICGT 129
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 42.3 bits (95), Expect = 1e-04
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESR 263
SQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 130 SQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDD 178
Query: 264 FEEIKKEVSSYIKKIGYNPAAVAFV 338
+ ++ E + G+N A +
Sbjct: 179 LDLVEMEARELLSLHGFNGDATPVI 203
Score = 33.1 bits (72), Expect = 0.069
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2
Query: 35 DAPGHRDFIKNMITGT 82
D PGH DFIKNMI GT
Sbjct: 114 DCPGHSDFIKNMICGT 129
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 257
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 134 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 184
Query: 258 SRFEEIKKEVSSYIKKIGY 314
+R E ++ ++ + + GY
Sbjct: 185 TR-ELVEMDIREQLNEFGY 202
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITG 79
+ K + ID PGH D+IKNMITG
Sbjct: 107 YETAKRHYAHIDCPGHADYIKNMITG 132
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 257
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 258 SRFEEIKKEVSSYIKKIGY 314
+R E ++ ++ + + GY
Sbjct: 186 TR-ELVEMDIREQLNEFGY 203
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITG 79
+ K + ID PGH D+IKNMITG
Sbjct: 108 YETAKRHYAHIDCPGHADYIKNMITG 133
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 84 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSE 257
+Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E
Sbjct: 135 AQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAE 185
Query: 258 SRFEEIKKEVSSYIKKIGY 314
+R E ++ ++ + + GY
Sbjct: 186 TR-ELVEMDIREQLNEFGY 203
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 2 FGXCKYYVTIIDAPGHRDFIKNMITG 79
+ K + ID PGH D+IKNMITG
Sbjct: 108 YETAKRHYAHIDCPGHADYIKNMITG 133
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.091
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 226 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 98
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.28
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 159 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVA 332
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 333 FVPISGWHGDNMLE 374
G+ + ML+
Sbjct: 168 MSLADGYFKEEMLQ 181
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 234 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 350
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 269 LKSRLTVWWLSGVHFVYSYN 210
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 217 PTISCLTPSVKASRACSRVCPFFE--IPASNSPVPAATISTA 98
PT+ +TPS K S + R P + P PA+T +TA
Sbjct: 270 PTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTA 311
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 234 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 350
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>Z83113-6|CAB05542.1| 120|Caenorhabditis elegans Hypothetical
protein K08H10.3a protein.
Length = 120
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 136 SNSPVPAATISTAQSA*DGSSDHVLDEISVSRSVDD 29
S SP P TI+ Q S+DH+LDE+S + VD+
Sbjct: 2 SRSPSPP-TITLQQDEMSESADHLLDELS-KKLVDE 35
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 347 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 252
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,040
Number of Sequences: 27780
Number of extensions: 173851
Number of successful extensions: 728
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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