Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I14
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   5.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   5.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   5.5  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    24   7.2  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    24   7.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    24   7.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    24   9.6  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    24   9.6  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 106 CSILIQAIFNQNKFDTCENRTY 41
           CS    ++FN NK D  +N T+
Sbjct: 270 CSFAYLSLFNPNKHDLVDNPTF 291


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 138 GLECPMSAWEVQPSVIYTVLTKKQRALIW 224
           G + P   W V  SV  T+  KK   ++W
Sbjct: 481 GYDVPKDFWNVTASVQATLEEKKYPGIVW 509


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 344 CNKSLSGRLSGPSQEVAQSSLDHTTGQFRDSLRHVSSIISPD 219
           CN+  + +LSG S E  +++   T      S+   S ++SPD
Sbjct: 32  CNEHDTTQLSGSSSEPLENNSSLTRSTDDPSVEIRSKLVSPD 73


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -3

Query: 353 CSLCNKSLSGRLSGPSQEVAQSSLDHTTGQFRDSLRHVSSIISPD 219
           C+L  KS   R S    E  +    H    FR+ + H   I   D
Sbjct: 23  CTLRVKSTKKRRSSTKDEETRGMHPHIKSSFRNGMNHARVIREED 67


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 AISKLARGMVKGALSDFLGR 311
           ++  L  G++ GAL+DF GR
Sbjct: 137 SLGALLGGIIAGALADFFGR 156


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 67  FDTCENRTYDPRAEILQPG 11
           FD  E  TY+P +EIL  G
Sbjct: 649 FDIYEEDTYEPNSEILLAG 667


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 154 CQHGRCSLQ*YIRYLRRSKE 213
           C++G CS + +I+ LRR  E
Sbjct: 170 CRYGICSPERFIQVLRRDNE 189


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 386 CSVRAYRSAPLCSLCNKSLSGRLS 315
           C++  YR  P C  C     G  S
Sbjct: 277 CAITRYRKTPTCIQCGADTKGLFS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,892
Number of Sequences: 5004
Number of extensions: 25940
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)