Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I14
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...    84   4e-17
AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinosit...    27   4.6  
AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinosit...    27   4.6  
AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical ...    27   6.1  
AC006642-1|ABD63221.1|  154|Caenorhabditis elegans Hypothetical ...    27   6.1  

>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 37/87 (42%), Positives = 57/87 (65%)
 Frame = +2

Query: 110 MIYNNLGNTGIRVSHVSMGGAAFSNIYGTYEEAKSINLVK*C*KHGVSYLETGPWYGQGS 289
           M Y  +  T IR+S +  G AA   ++G  E++  I +V+   K G++Y++TG WY Q  
Sbjct: 83  MNYRQIPGTDIRMSKIGFGAAAIGGMFGNVEDS-IIKIVETAIKQGINYIDTGYWYSQSR 141

Query: 290 SERLLGKALKDVPRDSYYIASKVGRYD 370
           SE +LGKAL  +PR +YYI++KVGR++
Sbjct: 142 SESILGKALSKIPRKAYYISTKVGRFE 168


>AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinositide
           3-kinase adaptersubunit protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 242 HGVSY--LETGPWYGQGSSERLLGKALKDVPRDSYYI--ASKVGRYDTLVQ 382
           HGV++  +E G WY   +    + KAL D P  S+ +  AS  G Y   V+
Sbjct: 9   HGVTHSLMEQG-WYWADADRSAVSKALSDQPDGSFIVRNASTPGDYTLSVK 58


>AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinositide
           kinase adaptersubunit protein 1 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 242 HGVSY--LETGPWYGQGSSERLLGKALKDVPRDSYYI--ASKVGRYDTLVQ 382
           HGV++  +E G WY   +    + KAL D P  S+ +  AS  G Y   V+
Sbjct: 9   HGVTHSLMEQG-WYWADADRSAVSKALSDQPDGSFIVRNASTPGDYTLSVK 58


>AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical
           protein B0511.13 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 151 PCQHGRCSLQ*YIRYLRRSKEH*SGEIMLETWRKLSRNWPVVWS 282
           PC++GRCS +  ++    S  H  G+I      KL R W +  S
Sbjct: 36  PCKYGRCS-ESSVKAFMISDTHLLGKINGHWLDKLKREWQMYQS 78


>AC006642-1|ABD63221.1|  154|Caenorhabditis elegans Hypothetical
           protein F49H12.7 protein.
          Length = 154

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 242 HGVSYLETGPWYGQGSSERLLGKALKDVPRDSYYIASKVG 361
           H   Y++ G W     S +L+ K + +     Y++ +K+G
Sbjct: 80  HWKDYVDKGGWKNIRKSHQLIAKLVANSIAQEYHLLAKIG 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,084
Number of Sequences: 27780
Number of extensions: 141236
Number of successful extensions: 332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)