Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I13
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    89   2e-19
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   2.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   5.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   5.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   5.7  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 89.0 bits (211), Expect = 2e-19
 Identities = 36/66 (54%), Positives = 56/66 (84%)
 Frame = +1

Query: 199 GIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQ 378
           GI L AMD+SHV+LVS+ +++DGF+ YRCDRNI++G+NL ++SK+L+CA ++D VT+KA+
Sbjct: 34  GISLQAMDSSHVALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKAE 93

Query: 379 DNADTV 396
           D  + +
Sbjct: 94  DTPEVL 99



 Score = 44.8 bits (101), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 28/33 (84%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDH 197
           M EAR  ++++LKK+L+AIK+L+T A FDC+D+
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDN 33


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 KKVLEAIKDLLTQATFDCDDH 197
           K+V  +  D+LTQ T  C DH
Sbjct: 436 KEVPSSFTDILTQKTIPCKDH 456


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 313 SSYP*ICFYRIYICQIHLL 257
           S YP + F R+Y+C I LL
Sbjct: 87  SPYPILLFTRLYMCLISLL 105


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 217  MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLG 318
            +D+SH  LV     A  F+ YRC +  SMG+  G
Sbjct: 959  LDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRG 990


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 229 ESYP*PKVGYQWSSQSKVACVSRSLMAS 146
           ESYP P  GY  +S + V+ +S+ + ++
Sbjct: 260 ESYPVPPSGYPLTSSTCVSSISQPIQST 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,967
Number of Sequences: 5004
Number of extensions: 30039
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)