Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I13
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...    98   2e-21
01_06_0860 - 32520966-32521061,32521120-32521196,32521219-32521279     29   1.8  
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    27   4.1  
09_02_0290 - 6963673-6963966,6964279-6964590,6964693-6964832,696...    27   7.2  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 26   9.5  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/67 (62%), Positives = 57/67 (85%)
 Frame = +1

Query: 196 TGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKA 375
           TG  L AMD+SHV+LV+L LR++GF+ YRCDRN+SMGMNL +M+K+L+CAG+ D +T+KA
Sbjct: 33  TGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKA 92

Query: 376 QDNADTV 396
            D +DTV
Sbjct: 93  DDGSDTV 99



 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDC 188
           M E RL++ S+LKKVLEAI++L+T A FDC
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDC 30


>01_06_0860 - 32520966-32521061,32521120-32521196,32521219-32521279
          Length = 77

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 LRRPLVSNFRLWITLMCHWYHSLSEQMDLTNI 280
           LR   +S F+  + L+CHW+H     MDL NI
Sbjct: 8   LRLSCLSGFQHHLGLLCHWHH-----MDLDNI 34


>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 345 STFKDFRHTTQVHTHRYVSIASIFVKSICS 256
           S F+D  H  Q+  HR+  + S+ +   CS
Sbjct: 350 SKFRDSSHMRQIQEHRHEHLKSVTIIGFCS 379


>09_02_0290 -
           6963673-6963966,6964279-6964590,6964693-6964832,
           6965124-6965187,6965263-6965493,6965580-6965714,
           6966484-6966517,6966664-6966692
          Length = 412

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 355 PYHQHI*GFSTYYPSSYP 302
           PYH  +  F  Y+PS YP
Sbjct: 190 PYHDGLFFFDVYFPSQYP 207


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 356 SLSPAHLRIFDILPKFIPIDMFLSHLYLSNPSALRVSDTNDT 231
           S++   +R+F   PKFIP+   L+   +S    L +SD  DT
Sbjct: 47  SMNSKMIRLFAPFPKFIPL---LAVFIISCSLPLAISDDTDT 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,807,263
Number of Sequences: 37544
Number of extensions: 174412
Number of successful extensions: 368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)