Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I13
         (398 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M15796-1|AAA35736.1|  261|Homo sapiens protein ( Human cyclin pr...   106   2e-23
J04718-1|AAA60040.1|  261|Homo sapiens PCNA protein.                  106   2e-23
CR541799-1|CAG46598.1|  261|Homo sapiens PCNA protein.                106   2e-23
CR536501-1|CAG38740.1|  261|Homo sapiens PCNA protein.                106   2e-23
BC062439-1|AAH62439.1|  261|Homo sapiens proliferating cell nucl...   106   2e-23
BC000491-1|AAH00491.1|  261|Homo sapiens proliferating cell nucl...   106   2e-23
AL121924-4|CAC27344.1|  261|Homo sapiens proliferating cell nucl...   106   2e-23
AF527838-1|AAM78556.1|  261|Homo sapiens proliferating cell nucl...   106   2e-23
AY310164-1|AAP58731.1|   73|Homo sapiens proliferating cell nucl...    66   4e-11
AY310163-1|AAP58730.1|   73|Homo sapiens proliferating cell nucl...    64   2e-10
AY310162-1|AAP58729.1|   73|Homo sapiens proliferating cell nucl...    63   4e-10

>M15796-1|AAA35736.1|  261|Homo sapiens protein ( Human cyclin
           protein gene, complete cds. ).
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>J04718-1|AAA60040.1|  261|Homo sapiens PCNA protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>CR541799-1|CAG46598.1|  261|Homo sapiens PCNA protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFE RL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEGRLVQGSILKKVLEALKDLINEACWD 29


>CR536501-1|CAG38740.1|  261|Homo sapiens PCNA protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>BC062439-1|AAH62439.1|  261|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>BC000491-1|AAH00491.1|  261|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>AL121924-4|CAC27344.1|  261|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>AF527838-1|AAM78556.1|  261|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 261

 Score =  106 bits (255), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 63/69 (91%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTM 369
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL SMSKILKCAG++D +T+
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITL 90

Query: 370 KAQDNADTV 396
           +A+DNADT+
Sbjct: 91  RAEDNADTL 99



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>AY310164-1|AAP58731.1|   73|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 73

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 27/42 (64%), Positives = 38/42 (90%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNL 315
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN++MG+NL
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNL 72



 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KD + +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDRINEACWD 29


>AY310163-1|AAP58730.1|   73|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 73

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNL 315
           +++G+ L +MD+SHVSLV LTLR++GFD YRCDRN +MG+NL
Sbjct: 31  SSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNPAMGVNL 72



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


>AY310162-1|AAP58729.1|   73|Homo sapiens proliferating cell nuclear
           antigen protein.
          Length = 73

 Score = 62.9 bits (146), Expect = 4e-10
 Identities = 26/42 (61%), Positives = 37/42 (88%)
 Frame = +1

Query: 190 TTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNL 315
           +++G+ L +MD+S VSLV LTLR++GFD YRCDRN++MG+NL
Sbjct: 31  SSSGVNLQSMDSSQVSLVQLTLRSEGFDTYRCDRNLAMGVNL 72



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFD 185
           MFEARL++ SILKKVLEA+KDL+ +A +D
Sbjct: 1   MFEARLVQGSILKKVLEALKDLINEACWD 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,432,850
Number of Sequences: 237096
Number of extensions: 1058355
Number of successful extensions: 1246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)