Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I13
         (398 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M33950-1|AAA28746.1|  260|Drosophila melanogaster protein ( D.me...   123   8e-29
AY122197-1|AAM52709.1|  260|Drosophila melanogaster LD45889p pro...   123   8e-29
AE013599-2982|AAS64796.1|  260|Drosophila melanogaster CG9193-PB...   123   8e-29
AE013599-2981|AAF57493.1|  260|Drosophila melanogaster CG9193-PA...   123   8e-29
AE014134-3147|AAF53835.1|  255|Drosophila melanogaster CG10262-P...    84   6e-17
AB195794-1|BAE94851.1|  255|Drosophila melanogaster proliferatin...    84   6e-17
BT021268-1|AAX33416.1|  216|Drosophila melanogaster RE50044p pro...    79   2e-15
AY167137-3|AAO17673.1|   36|Drosophila melanogaster PCNA protein.      52   2e-07
BT029039-1|ABJ16972.1| 1718|Drosophila melanogaster IP03621p pro...    28   4.0  
AE014134-1571|AAF52717.1| 1857|Drosophila melanogaster CG9487-PA...    28   4.0  
M34394-1|AAA28976.1| 1275|Drosophila melanogaster protein ( D.me...    27   7.0  
M21306-1|AAA56928.1| 1274|Drosophila melanogaster photoreceptor ...    27   7.0  
BT009947-1|AAQ22416.1|  736|Drosophila melanogaster RH67917p pro...    27   7.0  
AE014297-4482|AAF56970.1| 1275|Drosophila melanogaster CG7875-PA...    27   7.0  
BT021954-1|AAX51659.1|  657|Drosophila melanogaster AT15161p pro...    27   9.2  
AE014296-3526|AAF51715.2|  650|Drosophila melanogaster CG32437-P...    27   9.2  

>M33950-1|AAA28746.1|  260|Drosophila melanogaster protein (
           D.melanogaster proliferatingcell nuclear antigen (PCNA)
           gene, complete cds. ).
          Length = 260

 Score =  123 bits (297), Expect = 8e-29
 Identities = 57/67 (85%), Positives = 64/67 (95%)
 Frame = +1

Query: 196 TGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKA 375
           +GIQL AMDNSHVSLVSLTLR+DGFDK+RCDRN+SMGMNLGSM+KILKCA ++D VTMKA
Sbjct: 33  SGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKA 92

Query: 376 QDNADTV 396
           QDNADTV
Sbjct: 93  QDNADTV 99



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDD 194
           MFEARL +++ILKK+L+AIKDLL +ATFDC D
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSD 32


>AY122197-1|AAM52709.1|  260|Drosophila melanogaster LD45889p
           protein.
          Length = 260

 Score =  123 bits (297), Expect = 8e-29
 Identities = 57/67 (85%), Positives = 64/67 (95%)
 Frame = +1

Query: 196 TGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKA 375
           +GIQL AMDNSHVSLVSLTLR+DGFDK+RCDRN+SMGMNLGSM+KILKCA ++D VTMKA
Sbjct: 33  SGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKA 92

Query: 376 QDNADTV 396
           QDNADTV
Sbjct: 93  QDNADTV 99



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDD 194
           MFEARL +++ILKK+L+AIKDLL +ATFDC D
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSD 32


>AE013599-2982|AAS64796.1|  260|Drosophila melanogaster CG9193-PB,
           isoform B protein.
          Length = 260

 Score =  123 bits (297), Expect = 8e-29
 Identities = 57/67 (85%), Positives = 64/67 (95%)
 Frame = +1

Query: 196 TGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKA 375
           +GIQL AMDNSHVSLVSLTLR+DGFDK+RCDRN+SMGMNLGSM+KILKCA ++D VTMKA
Sbjct: 33  SGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKA 92

Query: 376 QDNADTV 396
           QDNADTV
Sbjct: 93  QDNADTV 99



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDD 194
           MFEARL +++ILKK+L+AIKDLL +ATFDC D
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSD 32


>AE013599-2981|AAF57493.1|  260|Drosophila melanogaster CG9193-PA,
           isoform A protein.
          Length = 260

 Score =  123 bits (297), Expect = 8e-29
 Identities = 57/67 (85%), Positives = 64/67 (95%)
 Frame = +1

Query: 196 TGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKA 375
           +GIQL AMDNSHVSLVSLTLR+DGFDK+RCDRN+SMGMNLGSM+KILKCA ++D VTMKA
Sbjct: 33  SGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKA 92

Query: 376 QDNADTV 396
           QDNADTV
Sbjct: 93  QDNADTV 99



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDD 194
           MFEARL +++ILKK+L+AIKDLL +ATFDC D
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSD 32


>AE014134-3147|AAF53835.1|  255|Drosophila melanogaster CG10262-PA
           protein.
          Length = 255

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 36/72 (50%), Positives = 54/72 (75%)
 Frame = +1

Query: 181 LIATTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDT 360
           L  +  G++L +MDNSHVSLV+L+L +D F+K+ CDRN+S+G++L S+ K+LKCA   D 
Sbjct: 28  LDCSENGLELQSMDNSHVSLVALSLASDCFEKFHCDRNVSLGLDLKSLGKVLKCANSDDA 87

Query: 361 VTMKAQDNADTV 396
           VT+KA D  + +
Sbjct: 88  VTIKAVDRPEKI 99



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/33 (42%), Positives = 26/33 (78%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDH 197
           M EARL ++ +LKK+++A+K+++ Q T DC ++
Sbjct: 1   MLEARLSQTLLLKKIVDALKEIIAQGTLDCSEN 33


>AB195794-1|BAE94851.1|  255|Drosophila melanogaster proliferating
           cell nuclear antigen2 protein.
          Length = 255

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 36/72 (50%), Positives = 54/72 (75%)
 Frame = +1

Query: 181 LIATTTGIQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDT 360
           L  +  G++L +MDNSHVSLV+L+L +D F+K+ CDRN+S+G++L S+ K+LKCA   D 
Sbjct: 28  LDCSENGLELQSMDNSHVSLVALSLASDCFEKFHCDRNVSLGLDLKSLGKVLKCANSDDA 87

Query: 361 VTMKAQDNADTV 396
           VT+KA D  + +
Sbjct: 88  VTIKAVDRPEKI 99



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/33 (42%), Positives = 26/33 (78%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDH 197
           M EARL ++ +LKK+++A+K+++ Q T DC ++
Sbjct: 1   MLEARLSQTLLLKKIVDALKEIIAQGTLDCSEN 33


>BT021268-1|AAX33416.1|  216|Drosophila melanogaster RE50044p
           protein.
          Length = 216

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 33/60 (55%), Positives = 47/60 (78%)
 Frame = +1

Query: 217 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQDNADTV 396
           MDNSHVSLV+L+L +D F+K+ CDRN+S+G++L S+ K+LKCA   D VT+KA D  + +
Sbjct: 1   MDNSHVSLVALSLASDCFEKFHCDRNVSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKI 60


>AY167137-3|AAO17673.1|   36|Drosophila melanogaster PCNA protein.
          Length = 36

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +3

Query: 99  MFEARLLRSSILKKVLEAIKDLLTQATFDCDD 194
           MFEARL +++ILKK+L+AIKDLL +ATFDC D
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSD 32


>BT029039-1|ABJ16972.1| 1718|Drosophila melanogaster IP03621p
           protein.
          Length = 1718

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 363 HSVLITSTFKDFRHTTQVHTHRYVSIAS 280
           HS+ +  T++D R T+QVH +   ++ S
Sbjct: 755 HSIAVEETWRDVRKTSQVHVNGGTAVTS 782


>AE014134-1571|AAF52717.1| 1857|Drosophila melanogaster CG9487-PA
           protein.
          Length = 1857

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 363 HSVLITSTFKDFRHTTQVHTHRYVSIAS 280
           HS+ +  T++D R T+QVH +   ++ S
Sbjct: 594 HSIAVEETWRDVRKTSQVHVNGGTAVTS 621


>M34394-1|AAA28976.1| 1275|Drosophila melanogaster protein (
           D.melanogaster trp proteingene, complete cds. ).
          Length = 1275

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 MDLTNI-DAIETYLWV*TWVVCRKSLNVLVIRTL 361
           MDL NI D I    +V TW++CR +  V+V R L
Sbjct: 452 MDLWNIVDYISNMFYV-TWILCRATAWVIVHRDL 484


>M21306-1|AAA56928.1| 1274|Drosophila melanogaster photoreceptor
           membrane-associatedprotein protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 MDLTNI-DAIETYLWV*TWVVCRKSLNVLVIRTL 361
           MDL NI D I    +V TW++CR +  V+V R L
Sbjct: 451 MDLWNIVDYISNMFYV-TWILCRATAWVIVHRDL 483


>BT009947-1|AAQ22416.1|  736|Drosophila melanogaster RH67917p
           protein.
          Length = 736

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 MDLTNI-DAIETYLWV*TWVVCRKSLNVLVIRTL 361
           MDL NI D I    +V TW++CR +  V+V R L
Sbjct: 452 MDLWNIVDYISNMFYV-TWILCRATAWVIVHRDL 484


>AE014297-4482|AAF56970.1| 1275|Drosophila melanogaster CG7875-PA
           protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 MDLTNI-DAIETYLWV*TWVVCRKSLNVLVIRTL 361
           MDL NI D I    +V TW++CR +  V+V R L
Sbjct: 452 MDLWNIVDYISNMFYV-TWILCRATAWVIVHRDL 484


>BT021954-1|AAX51659.1|  657|Drosophila melanogaster AT15161p
           protein.
          Length = 657

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 LLRSSILKKVLEAIKDLLTQATFDCDDHWYPTLGY 218
           ++R  I+    EA+KDLL         HW  + GY
Sbjct: 512 MVRDKIIDSQAEALKDLLPILLMSGRTHWSNSFGY 546


>AE014296-3526|AAF51715.2|  650|Drosophila melanogaster CG32437-PA
           protein.
          Length = 650

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 LLRSSILKKVLEAIKDLLTQATFDCDDHWYPTLGY 218
           ++R  I+    EA+KDLL         HW  + GY
Sbjct: 512 MVRDKIIDSQAEALKDLLPILLMSGRTHWSNSFGY 546


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,849,698
Number of Sequences: 53049
Number of extensions: 308775
Number of successful extensions: 524
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)