Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I13
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    73   8e-14
Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 72.9 bits (171), Expect = 8e-14
 Identities = 33/61 (54%), Positives = 45/61 (73%)
 Frame = +1

Query: 202 IQL*AMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTMKAQD 381
           + L AMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 382 N 384
           N
Sbjct: 61  N 61


>Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical
           protein F16A11.2 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +3

Query: 111 RLLRSSILKKVLEAIKDLLTQATFD 185
           RLLR+++ ++ ++ +K+ LTQ+ FD
Sbjct: 125 RLLRTNLFEENVKPLKEQLTQSLFD 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,736,723
Number of Sequences: 27780
Number of extensions: 162609
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)