Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I12
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   0.94 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.7  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 27  QRRHSDRVGRTQPLEAQEQ 83
           QR HSDRV   Q  + Q+Q
Sbjct: 79  QREHSDRVTSQQQQQQQQQ 97


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 353 LRKCDSSSP 327
           +RKCD SSP
Sbjct: 251 IRKCDESSP 259


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 166  VSSAPVSSHPWSDAPRATGPVLTSLMSGCS*ASSGWVRPTR 44
            V SAP+      DAP A   +   +MS  S   S W  P++
Sbjct: 1166 VKSAPIHCQTEQDAPEAPIAIKALVMSSESILVS-WRPPSQ 1205


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  EYSYSGAIVTAWAGPSH 66
           E +  GA+V  + GP H
Sbjct: 527 EQNVPGAVVRVFLGPKH 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,175
Number of Sequences: 438
Number of extensions: 1973
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)