Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I11
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 1.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.8
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 4.1
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 5.4
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 7.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.2
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 7.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 7.2
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 7.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 7.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 24 9.5
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 27.5 bits (58), Expect = 1.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 190 LNE*FFAWLSWRSSRHLMPSF 252
LNE F W+SW S H P +
Sbjct: 337 LNEGFATWMSWFSCNHFYPEW 357
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 228 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTI 335
V+SS + W + SA PS+ W QP +P +P +
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPAL 453
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 2.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 304 NHYLLTSPRQSVINICIRHMNRTK 375
NHY + S++N C+R++ +K
Sbjct: 22 NHYDMQREESSIVNACLRYLGYSK 45
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 328 RQSVINICIRHMNRTKHIELQAP 396
R+S+ NIC M+ + HI+L P
Sbjct: 555 RKSISNICCYMMDASTHIDLPPP 577
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 401 YFGACSSICFVRFIWRIHILITDCRGDVRR*WLNPGLL 288
YFG S I F F W H + DC G + + G+L
Sbjct: 236 YFGTYSHIAFRYFPWLPH--VGDCSGSLFAAFFGCGVL 271
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 315 PNVSPTIRYQYMYSPYESHKTYRTASTEIVSDRSSDPPKYGSY 443
P + P + Q +P E+ T ST+ + SS PP GS+
Sbjct: 497 PPLQPAVSEQE--TPSEAVSREGTRSTDATMEDSSRPPSNGSF 537
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 134 VLCSLF*TFNQNYWLQSSIKGYGRY 60
V+C L NQN+W+ + I R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 303 QPLSPNVSPTIRYQYMYSPYESHKTYRTASTEIVSDRSSDPP 428
QP N++PT + Y +AS + D S DPP
Sbjct: 419 QPNYANLTPTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPP 460
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 264 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYR 383
S++ P K+ P+S +SP + SP +H T++
Sbjct: 8 SETLPKQESKSSSAPVSNFLSPNNLTEQTCSPLRAHSTFK 47
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -2
Query: 248 EGIR*RDDRQDNQAKNHSFSMHVHFTARNNNYYN----*YICVLCSLF*TF 108
EG+R R+ + D +K H + H + YN Y+ +LC F F
Sbjct: 259 EGLRKRNVKDDQNSKGHEPDLIRHVVEEVSEEYNDKTVVYLNLLCDSFHNF 309
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 279 PSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYRTASTEIVSDRSSDPPKYGSY 443
P S++ ++ P VSPT P T ++S I S ++ P G Y
Sbjct: 243 PKSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKY 297
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 300 VQPLSPNVSPTIRYQYMYSPYESHKTYRTASTEI 401
+ ++P V RYQ S + S ++ ASTE+
Sbjct: 358 IHSVTPEVYKNPRYQSWISSFPSEVSHLIASTEV 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,028
Number of Sequences: 5004
Number of extensions: 43516
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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