Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I11
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0974 + 24988147-24989253                                         27   5.3  
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894...    27   7.1  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    27   9.3  
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    27   9.3  
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045...    27   9.3  
03_06_0103 + 31661707-31662798,31662806-31662833,31663632-316637...    27   9.3  

>12_02_0974 + 24988147-24989253
          Length = 368

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 351 YSPYESHKTYRTASTEIVSDRSSDPP 428
           Y+P  S+ T   +S+ +V+D SS PP
Sbjct: 93  YTPKPSYSTVIMSSSPVVADSSSSPP 118


>07_01_1032 -
           8947594-8947769,8947885-8948601,8948973-8949049,
           8949264-8949655,8949746-8950002,8950234-8950921
          Length = 768

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +3

Query: 192 KRMIFCLVILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESH 371
           K  + CL+ +  ++ +D        D   P+SQ+T + P+        + Q   +P +S+
Sbjct: 698 KAPLMCLLGVTHLSEADFTHATQDQDDGAPTSQRTTINPIGRQ-----QQQQFDTPQDSY 752

Query: 372 KTYRTASTE 398
            ++  +S E
Sbjct: 753 SSFSASSIE 761


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 259 HFKKKASDDATIAKITRQKIIRLVCMCISLPE 164
           H    A  D    +I+ + +  LVC C+SL E
Sbjct: 408 HVSSLAVIDLACCRISDENLFALVCQCVSLRE 439


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 295 PGFNHYLLTSPRQSVINICIRHMNRTKHIELQAPK 399
           PG NH  + S    + +I +    +  H+EL APK
Sbjct: 291 PGANHLKIASHDLQLRDIMVNSCEQITHMELVAPK 325


>05_06_0104 -
           25603568-25603867,25603965-25604162,25604247-25604526,
           25604615-25605419,25605518-25606673
          Length = 912

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 245 LLFEMGVGLSSAVITEDLGSTIIS*RLPDNPLSIYVFAI*IAQNISNCKHRNSLRPKFRS 424
           L+ E GVG ++ V  E L   I+   +P N L + + A+ +   ++  K+R     + ++
Sbjct: 207 LIGEPGVGKTAVV--EGLAQRIVRGDVPSNLLDVRLIALDMGALVAGAKYRGEFEERLKA 264


>03_06_0103 +
           31661707-31662798,31662806-31662833,31663632-31663721,
           31664725-31664789,31664864-31664980
          Length = 463

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 222 AIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTI 335
           A+VAS  + F++ GSD  P S  +      SP VS T+
Sbjct: 67  ALVASDLSDFVRSGSDELPRSVTQLAKLAASPEVSATV 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,287
Number of Sequences: 37544
Number of extensions: 284402
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)