Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I11
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    31   0.30 
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.4  

>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 264 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYRTASTEIVSDRSSDPP 428
           ++S P S QKT  Q      +PT+  QY+YS     + Y T + +++S +    P
Sbjct: 60  NNSKPISLQKTKTQFFLNYSNPTVLLQYLYSTTTVPRPYPTTNPKLISLQQPKTP 114


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 285 SQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYRTASTEIVSDRSSD-PPK 431
           SQ+  +  +  +V+P    Q+M +P  +H  +R A   +V D +   PPK
Sbjct: 40  SQQDGITSIETSVTPGHCPQFMVNPKTNHPKFRFAGVHLVRDPNGRFPPK 89


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 261 GSDSAPPSSQKTWVQPLSPNVSPTIR 338
           GSD  PP+S +  +  +SPN+   IR
Sbjct: 205 GSDVLPPASSEWHISKISPNLENKIR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,454
Number of Sequences: 27780
Number of extensions: 248998
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)