Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I10
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    79   2e-15
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    30   0.99 
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      30   0.99 
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      29   1.7  
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    29   3.0  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    29   3.0  
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical p...    27   7.0  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   7.0  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    27   9.2  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    27   9.2  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 178 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 357
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 358 YAILGFALSE 387
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 178 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 357
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 358 YAILGFALSE 387
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 178 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 357
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 358 YAILGFALSE 387
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
            protein.
          Length = 1173

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 138  CRHCCEWSHKSCVAENSSPGCRGDQSCGIQHFCVLRGATTDN 13
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 138  CRHCCEWSHKSCVAENSSPGCRGDQSCGIQHFCVLRGATTDN 13
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 207 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAENSSPGCRGDQSC 58
           ++G +E  H      CN +  L +C  C    H +C+ EN      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 207 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAENSSPGCRGDQSC 58
           ++G +E  H      CN +  L +C  C    H +C+ EN      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 207 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAENSSPGCRGDQSC 58
           ++G +E  H      CN +  L +C  C    H +C+ EN      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +3

Query: 3   TRLCCQSSHPSKHKNA------VCRKIDRPCSQDCYFQQHSSCATTRSS 131
           TR+ C S H  +H+N        C K  RP + +  + QH S  T  SS
Sbjct: 249 TRMDCVSHHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSS 297


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +3

Query: 3   TRLCCQSSHPSKHKNA------VCRKIDRPCSQDCYFQQHSSCATTRSS 131
           TR+ C S H  +H+N        C K  RP + +  + QH S  T  SS
Sbjct: 275 TRMDCVSHHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSS 323


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 144 CVCRHCCEWSHKSCV 100
           C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = -2

Query: 138 CRHCCEWSHKSCVAENSSPGCRGDQSCGIQHFCVLRGATTDNK 10
           C H C +     V  N     R D  C I+H   +    + N+
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNR 155


>U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical
           protein B0228.9 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 458 RTLQLPSY--IMRFQCYYYLEWTDVESNVWKPHP 553
           R+L +P +  ++ F   YY   T+V S+ W  HP
Sbjct: 63  RSLSVPEFQHVLTFISGYYQHLTEVRSDRWTDHP 96


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 50  CMPQD*SPLQPGLLFSATQLLCDHSQQCLHTHRLFQLHLLNYQ 178
           C+P D   ++  +L+ A + L D      +  R F  HL+N+Q
Sbjct: 3   CLPTDKLSIRACILYEALEHLNDEKYVYSNICRTFGYHLINFQ 45


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 165 RCNWNNLCVCRHCCEWSHKSC 103
           RC  N  C   H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 141 VCRHCCEWSHKSCVAENSSPGCRGDQSCGIQH 46
           +CR C  +  +  ++  S+  CR D+SC I +
Sbjct: 24  ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 168 SRCNWNNLCVCRHCCEWS-HKSCVAEN 91
           + CNWNN   C  C ++   + C A+N
Sbjct: 457 AECNWNNRYKCTICADYDLCRQCEAKN 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,851
Number of Sequences: 27780
Number of extensions: 241968
Number of successful extensions: 800
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)