Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I10
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 SLLSYDGVPSVVRFLS 443
           ++L YDGVPS +  +S
Sbjct: 80  TILRYDGVPSTLNVIS 95


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 438 ESEQQKERHHKTEETHSLRQGETQDGI*EQLLFKGG 331
           + +QQ++R  + +E   LR  E +  + E     GG
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGG 200


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 60  KIDRPCSQDCYFQQ 101
           ++D   S DCYF+Q
Sbjct: 46  EVDMTYSMDCYFRQ 59


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 302 VPSSLVMPGTPPLNNSCSHMPS 367
           +P+   M G PPL N    MP+
Sbjct: 420 IPNMSNMSGMPPLPNMPGSMPT 441


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 60  KIDRPCSQDCYFQQ 101
           ++D   S DCYF+Q
Sbjct: 78  ELDMDYSMDCYFRQ 91


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +2

Query: 287 LERYSVPSSLVMPGTPPLNNSCSHMPSWVSPC 382
           +E Y   + +++P  PP+   C    S    C
Sbjct: 416 IEEYLPGNGVIIPDDPPIGCECKTCNSKTKCC 447


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 287 LERYSVPSSLVMPGTPPLNNSCSHMPSWVSPC 382
           ++R  +  S+  P T  LN  C+ +    S C
Sbjct: 334 VKREKIKISVSYPSTETLNTKCNTLERTPSKC 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,732
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)