Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I09
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   0.60 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   1.8  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   4.3  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   5.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    24   7.4  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +1

Query: 79  PRPVTQLDGLEAAR-----QQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQE 243
           P P+ +L  +  AR     Q  ++K + LQ       QQ+ Q + Q          QQQ+
Sbjct: 225 PIPMQKLQSMPPARLISIYQNQIQKFRSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 284

Query: 244 Q 246
           Q
Sbjct: 285 Q 285



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +1

Query: 85  PVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
           P  +L  +   + Q    +Q +Q+      QQ+ Q + Q          QQQ+Q
Sbjct: 235 PPARLISIYQNQIQKFRSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 288



 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 QNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
           ++L+ +QQ Q+      QQ+ Q + Q          QQQ+Q
Sbjct: 251 RSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQ 291


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 175  QQEAQFKSQMDIMSHLHAAQQQEQHY 252
            ++E+QF  + D++  L+ +QQQ  HY
Sbjct: 1986 ERESQFNERYDLLLGLNDSQQQPFHY 2011


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 90  HRTGALAPYLRHLTPHSAAYH 28
           HRTG  A ++ H  PH+A  H
Sbjct: 219 HRTGMGASHVLHQNPHNAVEH 239


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQ 201
           R++ + K+ + +E     HQQ AQ+ +Q
Sbjct: 104 REEEISKLMERRELAIRLHQQNAQYMAQ 131


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 335 PAGTCAPSYPQTLASGIYYNS 397
           P GTC  +Y + L SG YYN+
Sbjct: 61  PNGTCLGNYNEYLPSG-YYNA 80


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = +1

Query: 103 GLEAARQQNLEKIQQLQETLHAAHQQE-----AQFKSQMDIMSHLHA----AQQQEQH 249
           GL+     ++  I  + ETL  AH+QE      +F+S ++  + LH      QQ+++H
Sbjct: 191 GLDQETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGKLSKIQQEQEH 248


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 139 IQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
           I Q     H +    A FKS+ D  S L+   + E H
Sbjct: 284 IPQQTNKFHKSKSSTALFKSKKDSSSSLNKMHKSESH 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,578
Number of Sequences: 5004
Number of extensions: 10105
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)