Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I09
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 30 0.59
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 29 1.0
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 29 1.8
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 29 1.8
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 29 1.8
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479... 28 2.4
01_01_0164 + 1403635-1403708,1403960-1403999,1404103-1404178,140... 28 2.4
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937 28 3.1
06_02_0109 - 11919279-11920109 27 4.1
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 27 4.1
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 5.5
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 27 5.5
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779... 27 5.5
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 27 5.5
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 27 7.2
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 27 7.2
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 26 9.6
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485... 26 9.6
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
+QQ+ + QQ QE H H Q+ Q Q LH ++QEQH
Sbjct: 484 QQQDQVQQQQQQEQPHDQHLQQVQMHDQQQ---PLHHEERQEQH 524
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 142 QQLQETLH--AAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
QQLQ+ H QQ+ QF+ Q + QQQ QH
Sbjct: 501 QQLQQLRHHQLLQQQQQQFQQQQQVQQQQQQQQQQFQH 538
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q + +Q ++ QQ Q+ H QQ+ QF+ Q QQQ Q
Sbjct: 515 QQQQFQQQQQVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQQQSQQLQQQHQ 565
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 121 QQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
QQ ++ QQ Q+ QQ+ QF+ Q Q Q+Q
Sbjct: 513 QQQQQQFQQQQQVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQ 554
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q ++ +QQ ++ Q Q+ QQ+ Q + Q + H QQQ Q
Sbjct: 521 QQQQVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQQQSQQLQQQHQQQQQPQ 571
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
P+P QL L+ ++ QQ+Q+ + Q + Q + Q L +QQ+Q
Sbjct: 852 PQPQPQLSMLDKMMLLKQQQQQQMQQQMQQQQQMQQQMQQQQKQRLQLLQLEQQQQ 907
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 PRP-VTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQE 243
P+P ++ LD + +QQ +++QQ + QQ Q + Q + L QQQ+
Sbjct: 854 PQPQLSMLDKMMLLKQQQQQQMQQQMQQQQQMQQQMQQQQKQRLQLLQLEQQQQQQ 909
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
RQQ + IQ Q L A QQ+ Q + Q QQQ+Q
Sbjct: 115 RQQQPQHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQ 157
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 91 TQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+QL EA QQ+ ++IQ Q L QQ+ Q +SQ +QQ++
Sbjct: 106 SQLQQQEAHSQQSSQQIQMQQLLLQRHAQQQQQQQSQQQPQQQRRQQKQQQR 157
>12_02_1238 -
27246769-27246948,27247030-27247104,27247848-27247959,
27248213-27248295,27248544-27248791,27249448-27249533,
27250131-27250210,27250310-27250480,27250998-27251099,
27251591-27251743,27252459-27252575,27252715-27252804,
27253057-27253196,27253339-27253396,27253931-27254010,
27254215-27254349,27254482-27254646,27254982-27255021
Length = 704
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 120 PGRFEPVELGHRTGALAPYLRHLTPHSAAYHHPR 19
PGR P+E G L P +R+L H A HH R
Sbjct: 68 PGRKTPLERAIAGGDL-PSVRYLIDHGADIHHER 100
>01_01_0164 +
1403635-1403708,1403960-1403999,1404103-1404178,
1404680-1405827
Length = 445
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 108 EPVELGHRTGALAPYLRHLTPHSAAYHHPRADY 10
+P + HR+ ++PY + P+S YH A Y
Sbjct: 390 QPQMMYHRSPQISPYTAYYNPYSYYYHPGAAGY 422
>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
Length = 860
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 395 CCSRCLRPGFEGKRGRMCL 339
CC R L +E KRG +CL
Sbjct: 274 CCGRMLGLSYESKRGHICL 292
>06_02_0109 - 11919279-11920109
Length = 276
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 333 HRQAHAPPLTL-KPWPQASTT 392
+R AHAPP T+ PW Q ++T
Sbjct: 113 YRDAHAPPPTMVAPWQQGAST 133
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 82 RPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+PV +++ L Q LE+ Q+ Q+ HQ++ Q + ++ QQQ+Q
Sbjct: 853 QPVPEVEHLLRV-QFELEQQQRRQQLQQEQHQRQLQQRQAQQLLQQQQQQQQQQQ 906
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q GL +QQ+ Q Q+ QQ+ Q QM + QQQ+Q
Sbjct: 706 QTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQ 756
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 121 QQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQE 243
QQN +QQ QE L Q AQ Q+ S LH+ +Q +
Sbjct: 522 QQNAIHLQQQQEHLQRQQSQPAQ---QLKAASSLHSVEQHK 559
>02_04_0364 +
22374735-22374749,22374903-22375076,22377858-22377935,
22379270-22380407,22380507-22380901,22382230-22382416,
22382872-22382942,22383705-22383755
Length = 702
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQM 204
Q+ E+ N+ KI++LQE LH A A + ++
Sbjct: 89 QIKEAESQSLANINKIKELQEQLHGAQDTVASLQIEL 125
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+Q E +Q Q+ H HQQ + QM M AAQQQ+Q
Sbjct: 81 QQAKAEHQKQQQQQYH--HQQHQHQQIQMQQMLLQRAAQQQQQ 121
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+QQ L+++QQ Q+ Q+ Q + Q QQQ+Q
Sbjct: 1132 QQQQLQQLQQQQQQQQQQQIQQQQQQQQQQQQQQQQIQQQQQQ 1174
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 100 DGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+ L +QQ L + Q LQ+ QQ+ + Q L QQQ+Q
Sbjct: 36 NALLTQQQQKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQ 84
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q L+ +QQ +K+QQ Q+ QQ+ Q + Q H++QQ +Q
Sbjct: 61 QQQKLQQQQQQQQQKLQQQQQ----QQQQKLQQQQQQQQNQPQHSSQQSQQ 107
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
+QQ +K+QQ Q+ QQ+ Q + Q + Q Q QH
Sbjct: 58 QQQQQQKLQQQQQQQQQKLQQQQQ-QQQQKLQQQQQQQQNQPQH 100
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQ---ETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q+ L+A Q L+ +QQ Q E L Q+ Q +Q ++ QQQ+Q
Sbjct: 929 QMYYLQAQHNQQLQSLQQQQLPTEHLQQNFMQQVQQLNQQMVLWQQQVQQQQQQ 982
>05_03_0249 -
10946993-10947073,10947307-10947432,10948497-10948552,
10949066-10949338,10951434-10951716
Length = 272
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 106 LEAARQQNLEKIQQLQETLHAAHQQEAQFK 195
LE A+ ++E+IQQ Q+ + ++Q +FK
Sbjct: 131 LEEAKHGSVEEIQQYQKEISRLNEQVQEFK 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,659,877
Number of Sequences: 37544
Number of extensions: 99981
Number of successful extensions: 491
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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