Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I09
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 33 0.098
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 31 0.23
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 31 0.23
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 31 0.23
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.30
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 31 0.30
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 29 1.2
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 29 1.2
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 2.1
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 2.1
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 2.8
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 28 2.8
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 2.8
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 2.8
Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical pr... 27 3.7
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein... 27 3.7
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 27 4.9
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 4.9
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 4.9
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 4.9
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 4.9
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 4.9
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 27 6.4
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 27 6.4
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 27 6.4
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 26 8.5
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 32.7 bits (71), Expect = 0.098
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
P+ V Q + A+QQ L++ QQL QQ+ Q Q + + AAQQ +Q
Sbjct: 370 PQNVAQPQPQQIAQQQQLQQQQQLAAEQQKQQQQQQQIAQQQQLAEQI-AAQQAQQ 424
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform a
protein.
Length = 4488
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
RQQ L + QQL + H HQQ+ Q + Q H Q +QH
Sbjct: 188 RQQQLIREQQLYQHQHQQHQQQQQ-QPQEQQQQRFHHFNQYQQH 230
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+QQ + + + L+ H+++ Q + + H H QQ+Q
Sbjct: 168 QQQQSPRQEVTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQ 210
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform d
protein.
Length = 4369
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
RQQ L + QQL + H HQQ+ Q + Q H Q +QH
Sbjct: 188 RQQQLIREQQLYQHQHQQHQQQQQ-QPQEQQQQRFHHFNQYQQH 230
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+QQ + + + L+ H+++ Q + + H H QQ+Q
Sbjct: 168 QQQQSPRQEVTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQ 210
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform c
protein.
Length = 4447
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
RQQ L + QQL + H HQQ+ Q + Q H Q +QH
Sbjct: 188 RQQQLIREQQLYQHQHQQHQQQQQ-QPQEQQQQRFHHFNQYQQH 230
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
+QQ + + + L+ H+++ Q + + H H QQ+Q
Sbjct: 168 QQQQSPRQEVTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQ 210
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQ 240
QL +AA + N EK+ LQE L A +Q AQ + + + + A QQ
Sbjct: 339 QLANKDAAVRLNEEKVHSLQERLELAEKQLAQSLKKAESLPSVEAELQQ 387
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQ 240
QL +AA + N EK+ LQE L A +Q AQ + + + + A QQ
Sbjct: 339 QLANKDAAVRLNEEKVHSLQERLELAEKQLAQSLKKAESLPSVEAELQQ 387
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 121 QQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q + + Q Q A QQ+ Q ++Q HL AAQQ +Q
Sbjct: 116 QAHAQAQAQAQAQAQAQVQQQHQLQAQAHAQQHLQAAQQAQQ 157
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHA-AHQQEAQFKSQMDIMSHLHAAQQQ 240
+A Q +++ QLQ HA H Q AQ Q L A+QQQ
Sbjct: 126 QAQAQAQVQQQHQLQAQAHAQQHLQAAQQAQQAQQAQQLQASQQQ 170
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 121 QQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
Q + + Q Q A QQ+ Q ++Q HL AAQQ +Q
Sbjct: 116 QAHAQAQAQAQAQAQAQVQQQHQLQAQAHAQQHLQAAQQAQQ 157
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHA-AHQQEAQFKSQMDIMSHLHAAQQQ 240
+A Q +++ QLQ HA H Q AQ Q L A+QQQ
Sbjct: 126 QAQAQAQVQQQHQLQAQAHAQQHLQAAQQAQQAQQAQQLQASQQQ 170
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
P + Q ++ A+QQ +++ Q+Q +H HQQ Q Q + H QQ +QH
Sbjct: 91 PPTMMQPQQMQQAQQQQAQQMHQMQ--IH--HQQHPQMMQQHAQQGY-HPHQQNQQH 142
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
Q+ ++ QQ+ + +QQ + + HQQ Q ++ SH H +Q QH
Sbjct: 110 QMHQMQIHHQQHPQMMQQHAQQGYHPHQQNQQHQAGQHQQSH-HQSQNHNQH 160
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
P + Q ++ A+QQ +++ Q+Q +H HQQ Q Q + H QQ +QH
Sbjct: 215 PPTMMQPQQMQQAQQQQAQQMHQMQ--IH--HQQHPQMMQQHAQQGY-HPHQQNQQH 266
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 94 QLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
Q+ ++ QQ+ + +QQ + + HQQ Q ++ SH H +Q QH
Sbjct: 234 QMHQMQIHHQQHPQMMQQHAQQGYHPHQQNQQHQAGQHQQSH-HQSQNHNQH 284
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 2317 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 2366
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 2339 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 2388
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 1160 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 1209
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 1138 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 1187
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 2317 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 2366
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQM--DIMSHLHAAQQQEQHY 252
+ A QQ ++IQQ Q+ Q +Q S + S L + QQQ+Q Y
Sbjct: 2339 QQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLY 2388
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQHY 252
RQQ +IQQ + A Q+ Q + H Q Q+QH+
Sbjct: 117 RQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHH 161
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 88 VTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSH 219
V++ + LE R++ K+Q++QE L A+Q+ + ++H
Sbjct: 1390 VSRAEELEETRRKLTHKVQEMQEQLENANQKIGTLEKNKQRLAH 1433
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQHY 252
RQQ +IQQ + A Q+ Q + H Q Q+QH+
Sbjct: 117 RQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHH 161
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 118 RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQHY 252
RQQ +IQQ + A Q+ Q + H Q Q+QH+
Sbjct: 117 RQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHH 161
>Z46787-1|CAA86739.2| 360|Caenorhabditis elegans Hypothetical
protein C16C10.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 143 WIFSRFCCRAASSPSSW 93
W+ + CCR A SP W
Sbjct: 153 WLKKKMCCRRAFSPEKW 169
>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
protein.
Length = 1376
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQ 201
EAA+ QNL K+QQ+Q+ AQ K Q
Sbjct: 66 EAAQLQNLAKMQQIQQLAQFGALMAAQKKQQ 96
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 112 AARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQE 243
A RQQ ++ QQ Q+ HQQ+ Q + H H QQQ+
Sbjct: 68 APRQQQQQQYQQQQQNYMMQHQQQHQQQ------HHYHQQQQQQ 105
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 319 GAAAHTGRHMRPLLPSNPGLR 381
G A HTGR RP L PG R
Sbjct: 217 GKAGHTGRDGRPGLEGTPGTR 237
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQF-KSQMDIMSHLHAAQQQEQ 246
P P+ + QQN ++ QQ Q A QQ + K MD + H H Q Q
Sbjct: 40 PAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMDTIQH-HTMQHPHQ 95
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQF-KSQMDIMSHLHAAQQQEQ 246
P P+ + QQN ++ QQ Q A QQ + K MD + H H Q Q
Sbjct: 42 PAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMDTIQH-HTMQHPHQ 97
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQF-KSQMDIMSHLHAAQQQEQ 246
P P+ + QQN ++ QQ Q A QQ + K MD + H H Q Q
Sbjct: 39 PAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMDTIQH-HTMQHPHQ 94
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQF-KSQMDIMSHLHAAQQQEQ 246
P P+ + QQN ++ QQ Q A QQ + K MD + H H Q Q
Sbjct: 77 PAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMDTIQH-HTMQHPHQ 132
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 PRPVTQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQF-KSQMDIMSHLHAAQQQEQ 246
P P+ + QQN ++ QQ Q A QQ + K MD + H H Q Q
Sbjct: 151 PAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMDTIQH-HTMQHPHQ 206
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQ--QEQH 249
+A + Q ++ QQ + H QQE Q + + H AQQ +QH
Sbjct: 648 QAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQH 696
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQ--QEQH 249
+A + Q ++ QQ + H QQE Q + + H AQQ +QH
Sbjct: 648 QAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQH 696
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 133 EKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
+ QQ + L ++HQQ ++Q S LH Q+QH
Sbjct: 352 QSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQLHAQQQH 390
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 133 EKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
+ QQ + L ++HQQ ++Q S LH Q+QH
Sbjct: 533 QSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQLHAQQQH 571
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 109 EAARQQNLEKIQQLQETLHAAHQQEAQFKSQMD 207
EA RQ+ +EK +Q E L QQ + K Q+D
Sbjct: 153 EAQRQEQIEKWKQASEKL---QQQREELKQQID 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,653,739
Number of Sequences: 27780
Number of extensions: 70270
Number of successful extensions: 595
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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