Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I09
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    30   0.011
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.55 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   2.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 29.9 bits (64), Expect = 0.011
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 115 ARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQHY 252
           A+QQ+ ++ QQ Q  ++A   Q+ Q + Q          QQQ+QH+
Sbjct: 420 AQQQHQQQQQQTQHVINAQQPQQQQQQQQQQ-QQQQQQQQQQQQHW 464


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 139  IQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
            +Q+ Q       QQ+ Q + Q          QQQ+QH
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQH 1234



 Score = 23.8 bits (49), Expect = 0.73
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 91   TQLDGLEAARQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSH 219
            +++ GL+  +Q+N   +QQ Q+      QQ+ Q + Q     H
Sbjct: 1193 SRIRGLQE-QQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQH 1234



 Score = 23.8 bits (49), Expect = 0.73
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 118  RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQH 249
            +QQ  ++ QQ Q+      QQ+ Q + Q          QQQ+++
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEY 1550



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 142  QQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
            QQ Q+      QQ+ Q +SQ          QQQ+Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQ 1537



 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 118  RQQNLEKIQQLQETLHAAHQQEAQFKSQMDIMSHLHAAQQQEQ 246
            + Q  +  QQ Q+      QQ++Q   Q          QQQ+Q
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQ 1541


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 367 LRVRGGACACRCGPQRR 317
           L +   ACA RC  QRR
Sbjct: 74  LSINHSACAIRCLAQRR 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,063
Number of Sequences: 438
Number of extensions: 829
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)