Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I07
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 29 0.23
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 0.41
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 0.54
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 0.94
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 3.8
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 3.8
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.0
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 24 6.7
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 6.7
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 24 6.7
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 24 6.7
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 24 6.7
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 24 6.7
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 24 6.7
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.23
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 84 FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFFPDNVKKQFNNMVDDF 263
+L C S+ + R E++ E + + ++ E FF ++ + + N+ +D+
Sbjct: 375 YLTSCLPSIKVILARVLESSPAFGFIERNELEQLSYHFRICEKFFKESSENKMLNLFEDY 434
Query: 264 NKF 272
N+F
Sbjct: 435 NEF 437
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 0.41
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = -3
Query: 325 ISVFFYFGASELGFMLLINLLKSSTMLLNCFLTLSGKKF 209
++++F + +GF + I+ +K+ +L++ FLTL GKKF
Sbjct: 516 LNIYFMIICNLIGFAVGIDGIKN--VLVSFFLTLKGKKF 552
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 0.54
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 150 GNAFSEIEKQFVEIKKQVQENFFPDNVKKQFNNMVDDF 263
G E E KK+ + PD+VKK FN+ + F
Sbjct: 463 GQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKF 500
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.1 bits (57), Expect = 0.94
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 129 DAEAASTGNAFSEIEKQFVEIKKQVQENFFPDNVKKQFNNMVDDFNKFM 275
D+E TG A + + K +F P N+ QF N+ + F F+
Sbjct: 72 DSELDDTGEAKRWFPRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFL 120
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 3.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 129 DAEAASTGNAFSEIEKQFVEIKKQVQENFFPDNVK 233
D+E+ + F EI + E++KQ Q+ ++ D K
Sbjct: 173 DSESKKLSDKFVEIRSELDEVRKQ-QDGYYKDQRK 206
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -2
Query: 143 CCFGVAFHKSVNADKADGQEYNQMFVHFEVSSHNFSYEQLNLVP 12
C FGV N +G+ YN + V+ N L VP
Sbjct: 367 CLFGVVRSPKDNQGLLEGKNYNASSISKIVNIQNLGLPSLETVP 410
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.6 bits (51), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 204 QENFFPDNVKKQFNNMVDDFNKFMS 278
QENF DN+ + +N V++ F S
Sbjct: 438 QENFDSDNLSESLDNSVENLTVFPS 462
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 126 RDAEAASTGNAFSEIEKQFVEIKKQV 203
+D AA+T +E+EKQ E+K +V
Sbjct: 78 QDDLAAATPEELAEMEKQIQELKDEV 103
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 253 TMLLNCFLTLSGKKFSCTCFLI----STNCFSIS 164
T + +CF + S KFS T +L+ CFSIS
Sbjct: 91 TRVKSCFSSSSPSKFSFTQWLVGFTDGDGCFSIS 124
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 189 IKKQVQE-NFFPDNVKKQFNNMVDDFNKFMSSMNPN 293
IK Q + N + +K+ N++ +F+KF +S PN
Sbjct: 61 IKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPN 96
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 189 IKKQVQE-NFFPDNVKKQFNNMVDDFNKFMSSMNPN 293
IK Q + N D +K NN+ +F+KF S P+
Sbjct: 32 IKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 165 EIEKQFVEIKKQVQENFFP-DNVKKQFNNMVDDFNKFMSSMN 287
+IEK F E+KK +Q ++ P N + DD N ++ N
Sbjct: 5 DIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGAN 46
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 189 IKKQVQE-NFFPDNVKKQFNNMVDDFNKFMSSMNPN 293
IK Q + N D +K NN+ +F+KF S P+
Sbjct: 52 IKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 87
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 6.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 165 EIEKQ--FVEIKKQVQE--NFFPDNVKKQFNNMVDDFNKFMSSMNPN 293
++ KQ F I K ++ N D +K NN+ +F+KF S P+
Sbjct: 21 KVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,403
Number of Sequences: 5004
Number of extensions: 18565
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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