Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I07
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    27   4.7  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   4.7  
01_05_0377 - 21625009-21625379,21625677-21625731,21626647-21626733     27   6.2  
12_01_0272 + 1985348-1986036,1986142-1988020                           26   8.2  
11_01_0271 + 2039100-2041760                                           26   8.2  
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322...    26   8.2  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    26   8.2  

>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 367 CMLTVGNSYIGIIIISVFFYFGASELGFMLLI 272
           C     + YI ++++SVFFY G   L F+ ++
Sbjct: 201 CRALKSSVYILVLVLSVFFYVGIHILVFIRVV 232


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 36  RKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQ 200
           + VV  D     +L+  +   F S+H  +    E  S+GN  ++IE+   +++ Q
Sbjct: 321 KNVVESDHSPIPNLLDPIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKTDLESQ 375


>01_05_0377 - 21625009-21625379,21625677-21625731,21626647-21626733
          Length = 170

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 EIKKQVQENFFPDNVKKQFNNMVDDFNKFMSSMNPNSE 299
           +I  +V   +F  N  K+ NN+ DD N   SS+   ++
Sbjct: 3   QIMGKVGGYWFKQNAGKEINNIGDDINSISSSIGDGAK 40


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 367 CMLTVGNSYIGIIIISVFFYFGASELGFMLLIN 269
           C     + Y+ ++++ VF Y G   L FML ++
Sbjct: 440 CRQASKSVYVSVLVLPVFLYVGIHVLVFMLEVS 472


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 367 CMLTVGNSYIGIIIISVFFYFGASELGFMLLIN 269
           C     + Y+ ++++ VF Y G   L FML ++
Sbjct: 475 CRQASKSVYVSVLVLPVFLYVGIHVLVFMLEVS 507


>07_03_1702 +
           28828635-28828905,28831222-28831448,28831601-28832233,
           28832311-28832760
          Length = 526

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 192 KKQVQENFFPDNVKKQFNNMVDDFNKFMSS 281
           +K +   FFPD VK   + MVD     +SS
Sbjct: 153 RKLIAPEFFPDKVKGMVDLMVDSAQVLVSS 182


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  KRLQNEQTFDYIPGRLLYQRSRFCETRRRSSKHRQRV 160
           K + +E+TFDYI G ++  R+      R S K +  V
Sbjct: 263 KLIASEKTFDYIEGFVIINRTGILNNWRTSFKPQDPV 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,103,656
Number of Sequences: 37544
Number of extensions: 103332
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)