Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I07
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 29 0.80
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 29 0.80
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 28 2.4
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 28 2.4
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 27 3.2
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 27 3.2
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 27 3.2
U97010-1|AAB52322.1| 334|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical p... 26 9.9
Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical pr... 26 9.9
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 26 9.9
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 26 9.9
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 29.5 bits (63), Expect = 0.80
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 6 GIXHEV*LLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFV 185
G+ ++ + KV + + K ++ A CF+++H D AAS ++ ++
Sbjct: 33 GLIRDIGQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIG 92
Query: 186 EIK--KQVQENFFPDNVKKQ 239
K K++ +NF + K+Q
Sbjct: 93 NKKTLKELHDNFKSSDTKQQ 112
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 29.5 bits (63), Expect = 0.80
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 6 GIXHEV*LLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFV 185
G+ ++ + KV + + K ++ A CF+++H D AAS ++ ++
Sbjct: 33 GLIRDIGQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIG 92
Query: 186 EIK--KQVQENFFPDNVKKQ 239
K K++ +NF + K+Q
Sbjct: 93 NKKTLKELHDNFKSSDTKQQ 112
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 220 GKKFSCTCFLISTNCFSISLNALPVLAASASRFTKA*TLIKQTAR 86
GKKF I T C IS + P+LA + R T A + T++
Sbjct: 97 GKKFDYLLLFIGTICAIISGVSQPILALVSGRVTNALLVYPPTSK 141
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 220 GKKFSCTCFLISTNCFSISLNALPVLAASASRFTKA*TLIKQTAR 86
GKKF I T C IS + P+LA + R T A + T++
Sbjct: 97 GKKFDYLLLFIGTICAIISGVSQPILALVSGRVTNALLVYPPTSK 141
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 349 NSYIGIIIISVFFYFGASELGFMLLINL 266
N+++ ++ + + YFG S++GF++ I L
Sbjct: 112 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 139
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 349 NSYIGIIIISVFFYFGASELGFMLLINL 266
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 349 NSYIGIIIISVFFYFGASELGFMLLINL 266
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U97010-1|AAB52322.1| 334|Caenorhabditis elegans Hypothetical
protein W08A12.4 protein.
Length = 334
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 165 EIEKQFVEIKKQVQENFFPDNVKKQFNNMVDD 260
E+ +QF EIKK +Q + D +++ + N +++
Sbjct: 181 EMNRQFEEIKKIMQMRVWNDTIERNWTNRLNE 212
>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
protein Y70C5A.2 protein.
Length = 1037
Score = 26.6 bits (56), Expect = 5.7
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -3
Query: 319 VFFYFGASE---LGFMLLINLLKSSTMLLNCFLTLSGKKFSCTCFLISTNCFSISLNALP 149
++F +SE G LL+NL + L+N FL G+K T + S L LP
Sbjct: 421 IYFRDSSSESLKTGNALLMNLNDAYQWLVN-FLRNQGRKLRTTGIFLVVEDASQVLLVLP 479
Query: 148 VLAASASRFTKA*TLIKQTARNII 77
++ + +F ++ KQ ++II
Sbjct: 480 LVDQNILKFFVISSIYKQGKKSII 503
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 180 FVEIKKQVQENFFPDNVKKQFNNMVDDFNKFMSSMN 287
F+E+ K+V+EN + +Q+N V D +K + ++
Sbjct: 37 FIEVSKEVRENNLQGDFDEQYNCHVLDEDKLLDHIS 72
>Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical
protein ZC506.1 protein.
Length = 931
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 146 ACCFGVAFHKSVNADKADGQEYNQMFVHFEVSSHNFSYEQLNLVPNSC 3
A C+ ++ + ++ K + Y+ MF+H S N+++ L+P SC
Sbjct: 13 ALCYRISHGEELDKKKLQKEAYD-MFMHGYNSYMNYAFPADELMPLSC 59
>Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 138 AASTGNAFSEIEKQFVEIKKQVQENFFPDNVKKQFNNMVDDFNKFMSSMNPNSEA 302
AA+ N F++ ++ + + +++F K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 138 AASTGNAFSEIEKQFVEIKKQVQENFFPDNVKKQFNNMVDDFNKFMSSMNPNSEA 302
AA+ N F++ ++ + + +++F K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 295 ELGFMLLINLLKSSTMLLNCFLTLSGKKFSCTCFLISTNCFSI 167
++ +L+++++ S L+ C LT S F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 295 ELGFMLLINLLKSSTMLLNCFLTLSGKKFSCTCFLISTNCFSI 167
++ +L+++++ S L+ C LT S F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,528,671
Number of Sequences: 27780
Number of extensions: 106417
Number of successful extensions: 481
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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