Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I05
(258 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 0.72
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 2.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 2.2
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 2.2
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 2.2
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 24 2.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 24 3.8
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy... 23 5.1
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 23 5.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 23 5.1
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 23 5.1
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 23 6.7
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 23 8.9
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 23 8.9
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 23 8.9
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 0.72
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 238 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 59
TSK +N +L +P S+ +F D +++ +NDP+ +ML N +
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379
Query: 58 IIST 47
+ +T
Sbjct: 380 VRNT 383
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 103 NDPSQKMLLTNVRKNII 53
N P+ K LLTN R NI+
Sbjct: 123 NTPASKRLLTNERSNIL 139
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 133 SKSVMSHGTNNDPSQKMLLTNVRKNIISTGFILH 32
+K+ MSH +N ++ L ++KN + TG H
Sbjct: 161 AKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSH 194
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 42 NPVEIIFFLT-FVKSIFCDGSLLVPCDMTDL 131
NP+ I +T F+K + C+ + PCD+ ++
Sbjct: 332 NPLSIQRTITHFIKKLVCNECSMHPCDIEEI 362
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 214 GSMGRILYCLMPLLVFSRNT 155
GS RI+Y L+ L+FSR T
Sbjct: 579 GSFERIVYALLRTLLFSRAT 598
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 175 LVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVR 65
++ ++N F+ PK S + T P ++LL NVR
Sbjct: 50 VIGAQNDFLTVPKHSGKKVPIDTTPTPRDEILLENVR 86
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 215 RVYGADII--LFDAFTCFLKKYLRR 147
+++ A++I LFDAFT KK L +
Sbjct: 908 KIFSANVIYHLFDAFTAHQKKILEQ 932
>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 206
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 159 IPSSTDPNNPNLSCRMVP 106
+PS+T P PN +C P
Sbjct: 149 LPSATSPIQPNFNCIQEP 166
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 72 FVKSIFCDGSLLVPC 116
FVK F GS LVPC
Sbjct: 219 FVKLAFLTGSSLVPC 233
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 180 LYLFSQEIPSSTDPNNPNLSCRMVPTMTRHKK 85
L+++S +IP +P P+L + + H K
Sbjct: 703 LFIYSTDIPLKAEPLVPDLPVKQLKEKASHFK 734
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 174 LFSQEIPSSTDPNNPNLSCRMVPTMT 97
LF+ ++P DP+NPN + P +T
Sbjct: 135 LFAYDLPP--DPSNPNATSSSPPPLT 158
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 127 SVMSHGTNNDPSQKMLLTN 71
S++SH T PS+ M+L+N
Sbjct: 212 SLLSHATLARPSESMVLSN 230
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 168 SQEIPSSTDPNNPNLSCRMVPTMT 97
SQ+ + T PNN N+S VP T
Sbjct: 324 SQKDDNVTAPNNMNISYPSVPAHT 347
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 200 DIILFDAFTCFLKKYLRRLTQTIQICH 120
D++LFDA + Y+++L ++ H
Sbjct: 263 DVVLFDASDVTITPYVQQLASLLKNMH 289
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 22.6 bits (46), Expect = 8.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 170 FLKKYLRRLTQTIQICHVAWYQQ*PVTKNALNKRKKKYN 54
F ++ LR LT + V W Q T LNK Y+
Sbjct: 427 FSEEQLRNLTSDMAKLGVCWQVQPYFTCQVLNKASVDYS 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,512
Number of Sequences: 5004
Number of extensions: 21478
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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