Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I05
         (258 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0488 - 8824980-8825267,8825364-8827775                           28   1.2  
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438...    27   1.6  
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954...    27   2.1  
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    27   2.7  
08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567     26   4.8  
08_02_1259 - 25676523-25676624,25676726-25676851,25677023-256771...    25   8.4  
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611...    25   8.4  

>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 174 LFSQEIPSSTDPNNPNLSCRMVPTMTRHKKCS 79
           +FS    SS  P++ +L     PT+  H+ CS
Sbjct: 156 IFSSPSQSSASPSSKSLESNQSPTLNDHQHCS 187


>06_03_1298 +
           29141578-29141623,29142129-29142250,29143818-29143874,
           29143983-29144138,29144220-29144304,29144575-29144665,
           29144807-29144971,29145064-29145186,29145334-29145409,
           29145513-29145642,29145951-29147824,29148339-29148529,
           29148697-29148860,29149164-29149275,29149276-29149294
          Length = 1136

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 174 LFSQEIPS-STDPNNPNLSCRMVPTMTRHKKCS*QT*EKI 58
           + ++EIPS ST P+  N +  + P + R+K CS    EK+
Sbjct: 722 VLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKV 761


>05_03_0194 +
           9547626-9547715,9549235-9549311,9549493-9549564,
           9549648-9549719,9550047-9550118,9550199-9550225,
           9550226-9550297,9550382-9550453,9550897-9550968,
           9551047-9551121,9551226-9551297,9551384-9551449,
           9551544-9551609,9551683-9551727,9551822-9551886,
           9551971-9552350,9552419-9552545,9552688-9552846,
           9552929-9553047,9553182-9553392,9553582-9553762,
           9553845-9553995,9554086-9554448
          Length = 901

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 182 AFTCFLKKYLRRLTQTIQICHVAWYQQ*PVTKNALNKRKKK 60
           +FT   + Y  R+++     H+ W    P  +N + KR+ K
Sbjct: 483 SFTAVNRSYTARVSKNFLEIHLFWADFTPTVRNGVPKRRSK 523


>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 162 LEKTSKGIKQYNIRPIDPWFISSL 233
           L + S+ +K  ++ P +PW +SSL
Sbjct: 11  LAQRSERVKSVDLHPTEPWILSSL 34


>08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567
          Length = 412

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 72  FVKSIFCDGSLLVPCDMTDLDCLGQSTKVFLE 167
           F   + CDG +L+PC   ++     +T  F+E
Sbjct: 260 FSMPLHCDGLILIPCVSGEIFVCNLTTSEFVE 291


>08_02_1259 -
           25676523-25676624,25676726-25676851,25677023-25677134,
           25677294-25677385,25677751-25677828,25677910-25677989,
           25678079-25678181,25678274-25678336,25678988-25679194
          Length = 320

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 226 DMNQGSMGRILYCLMPLLVFSRNTFVD 146
           D +  SMG  ++ L PL + +RN   D
Sbjct: 117 DFSNDSMGHPIFSLSPLAIHTRNLLSD 143


>02_02_0016 -
           6118739-6118758,6119116-6119236,6119478-6119613,
           6119887-6119993,6120316-6120409,6120509-6120705,
           6121872-6121943,6122597-6122773,6122862-6122936,
           6123027-6123167,6123837-6124025,6124415-6124480,
           6124564-6124714,6125040-6125200,6126279-6126410,
           6126508-6126833,6126906-6126942,6127056-6127088,
           6127500-6127554,6127666-6127753,6127817-6127862
          Length = 807

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 162 LEKTSKGIKQYNIRPIDPWFISSL 233
           L + S+  K  ++ P +PW +SSL
Sbjct: 27  LAQRSERAKSVDLHPTEPWILSSL 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,356,038
Number of Sequences: 37544
Number of extensions: 129849
Number of successful extensions: 282
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)