Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I05
(258 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical pr... 28 0.80
AF068710-2|AAC17770.1| 476|Caenorhabditis elegans Hypothetical ... 27 1.8
U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 26 4.2
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 26 4.2
AC006693-9|AAF60388.1| 93|Caenorhabditis elegans Hypothetical ... 25 5.6
Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 25 7.4
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 25 7.4
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 25 7.4
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 25 7.4
AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine re... 25 7.4
U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical pr... 25 9.8
U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical pr... 25 9.8
AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical... 25 9.8
>U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical
protein T14E8.4 protein.
Length = 475
Score = 28.3 bits (60), Expect = 0.80
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 36 NMNPVEIIFFLTFVKSIF--C-DGSLLVPC-DMTDLDCLGQSTKVFLEKTSKGIKQYNIR 203
NMNP+E+IF +T + C S ++PC D + C S K LE+ K + Y
Sbjct: 11 NMNPIEVIFNITTEAKLMHTCRTYSRILPCFDQKMVQCGKPSEKTQLER-GKRLHSYLCA 69
Query: 204 P 206
P
Sbjct: 70 P 70
>AF068710-2|AAC17770.1| 476|Caenorhabditis elegans Hypothetical
protein T06A1.5 protein.
Length = 476
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 220 NQGSMGR-ILYCLMPLLVFSRNTFVD 146
N S+G +L+C++ + +FSRN+F D
Sbjct: 4 NNASLGVFVLFCILFVYIFSRNSFDD 29
>U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical
protein F56F10.4 protein.
Length = 958
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 36 NMNPVEIIFFLTF-VKSIFCDGSLLVPCDMTD 128
N +E IFF++ + + CDG L++P + D
Sbjct: 78 NKARIEHIFFISSNIALVLCDGQLIIPIHIKD 109
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 78 KSIFCDGSLLVPCDM 122
K + C+G LL+PCD+
Sbjct: 551 KGMICNGRLLLPCDL 565
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 78 KSIFCDGSLLVPCDM 122
K + C+G LL+PCD+
Sbjct: 631 KGMICNGRLLLPCDL 645
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 78 KSIFCDGSLLVPCDM 122
K + C+G LL+PCD+
Sbjct: 551 KGMICNGRLLLPCDL 565
>AC006693-9|AAF60388.1| 93|Caenorhabditis elegans Hypothetical
protein W02H5.1 protein.
Length = 93
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 174 LFSQEIPSSTDPNNPNLSCR 115
L+ Q+ PSS DP+ PN S +
Sbjct: 22 LYYQDGPSSADPSTPNRSAQ 41
>Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical
protein C15H11.4 protein.
Length = 333
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 90 CDGSLL--VPCDMTDLDCLGQSTKVFLEKT 173
CD + L + CD+TD + + ++ K LE T
Sbjct: 95 CDATRLHFIECDLTDFESVRRAAKETLEST 124
>Z75710-8|CAO82023.1| 394|Caenorhabditis elegans Hypothetical
protein D1081.10 protein.
Length = 394
Score = 25.0 bits (52), Expect = 7.4
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 18 EECLSCN-MNPVEI-IFFLTFVKS-IFCDGSLLVPCDMTDLDCL 140
+ECL + P+ I IFF T +S IF G+ LV D D+D L
Sbjct: 257 QECLETREITPLSIRIFFFTNGESCIFIRGAPLVKPDSFDIDRL 300
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 98 PVTKNALNKRKKKYNLY 48
PVT+N+ NK++ + NLY
Sbjct: 1028 PVTQNSANKKRAQDNLY 1044
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 98 PVTKNALNKRKKKYNLY 48
PVT+N+ NK++ + NLY
Sbjct: 1053 PVTQNSANKKRAQDNLY 1069
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 98 PVTKNALNKRKKKYNLY 48
PVT+N+ NK++ + NLY
Sbjct: 1094 PVTQNSANKKRAQDNLY 1110
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 98 PVTKNALNKRKKKYNLY 48
PVT+N+ NK++ + NLY
Sbjct: 1094 PVTQNSANKKRAQDNLY 1110
>AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 13 protein.
Length = 292
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 48 VEIIFFLT--FVKSIFCDGSLLVPCDMTDLDC 137
V II+ LT V +FCD L +P + T L C
Sbjct: 128 VAIIYGLTEDIVLYVFCDFQLTIPENCTALGC 159
>U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical
protein C06A6.4b protein.
Length = 411
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 38 YESCRDYIFSY 70
YE+CRD++F Y
Sbjct: 25 YEACRDFLFKY 35
>U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical
protein C06A6.4a protein.
Length = 397
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 38 YESCRDYIFSY 70
YE+CRD++F Y
Sbjct: 25 YEACRDFLFKY 35
>AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical
protein F55A12.10 protein.
Length = 220
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 24 CLSCNMNPVEIIFFLTFVKSIFCDGSLLVP 113
C C +P + FF+T +FC+ P
Sbjct: 6 CNGCGCSPSKRQFFITACSHVFCETCRTTP 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,417,791
Number of Sequences: 27780
Number of extensions: 120646
Number of successful extensions: 274
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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