Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I05
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.15 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   5.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   9.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.15
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 CLGQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDV 239
           C+ ++ +  +   + G+K + I PI+P  + S+ +
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKI 77


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 235 SKDDMNQGSMGRIL 194
           +K DMN  +MGR L
Sbjct: 505 NKPDMNYETMGRAL 518


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 207 IDPWFISSLDV 239
           +DPWF  S ++
Sbjct: 55  LDPWFAGSTNI 65


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 204 PIDPWFISSLD 236
           P+  W++ SLD
Sbjct: 592 PVQLWYVPSLD 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,807
Number of Sequences: 438
Number of extensions: 1472
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)