Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I03
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 38 1e-04
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 38 1e-04
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 38 1e-04
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 1.0
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 24 2.4
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 24 2.4
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 23 5.4
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 23 5.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 23 5.4
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 23 7.2
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 23 7.2
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 23 7.2
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 22 9.5
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 22 9.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 22 9.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 22 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 38.3 bits (85), Expect = 1e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 32.3 bits (70), Expect = 0.009
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEK HIN+VVIGH
Sbjct: 1 MGKEKGHINVVVIGH 15
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 38.3 bits (85), Expect = 1e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 32.3 bits (70), Expect = 0.009
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEK HIN+VVIGH
Sbjct: 1 MGKEKGHINVVVIGH 15
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 38.3 bits (85), Expect = 1e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 32.3 bits (70), Expect = 0.009
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEK HIN+VVIGH
Sbjct: 1 MGKEKGHINVVVIGH 15
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 1.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 104 SGYF*IHFFTSLNYFFRHSPRITIRL 27
+ YF + +FT+LN F + ++ +R+
Sbjct: 114 AAYFCLQYFTNLNSFLYYEAKVDLRM 139
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 LLDSLFHFTKLFLQTLTTDYNQAVISEID-LVP 1
L+ LFH ++ T T YN A + D +VP
Sbjct: 1134 LVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVP 1166
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 142 CRHRTPSTPASPQQL 186
C H+ P+ ASPQQL
Sbjct: 300 CLHKDPTLRASPQQL 314
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 166 ESTVSDDDNVNVNLF 122
E + SDDD+ NVN F
Sbjct: 217 EESYSDDDDTNVNEF 231
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 87 SLFHFTKLFLQTLTTDYNQAVISE 16
++ +FTK + Q LT N+AV E
Sbjct: 85 AMLYFTKGYEQNLTEVINEAVFQE 108
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 134 CEPFLCPFLVSGYF*IHFFTSLNY 63
C+ CPF + G+F I +L+Y
Sbjct: 229 CQCVSCPFQIPGHFFISKSLALSY 252
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 178 VDLPESTVSDDDNVNVNL 125
+D+PE T +DD V++++
Sbjct: 7 LDMPEMTEVEDDTVDIHI 24
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 103 LTKNGQRKGSH*HCRHRTPSTPASPQ 180
LT+ GQ+ G+ + R +PA PQ
Sbjct: 216 LTRTGQKLGTDMNIRLELLKSPAKPQ 241
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 117 PIFG*WLLLDSLFHFTKLFLQTLTTD--YNQAVISE 16
P FG WL+ DS+ + F++++ + + VIS+
Sbjct: 439 PAFGVWLIFDSVDNRASDFVRSMRSSVILEEVVISD 474
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 67 TISSDTHHGLQSGCNIRD 14
TIS T H L S C ++D
Sbjct: 432 TISGSTDHLLLSRCEVKD 449
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -3
Query: 213 YHRICRSSDQLLWTCRSRRCP 151
YH++C S ++T +CP
Sbjct: 35 YHKMCESCVDRIFTTGPAQCP 55
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 125 KVHINIVVIGH 157
K H+NIV IGH
Sbjct: 236 KEHVNIVFIGH 246
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 139 HCRHRTPSTPAS 174
H RHR P TP S
Sbjct: 56 HSRHRYPETPPS 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 877,964
Number of Sequences: 5004
Number of extensions: 13707
Number of successful extensions: 39
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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