Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I03
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           39   5e-04
03_01_0547 + 4093196-4093657,4094267-4095148                           39   5e-04
03_01_0544 + 4082528-4082989,4083585-4084466                           39   5e-04
03_01_0543 + 4076981-4077442,4078145-4079026                           39   5e-04
06_02_0166 + 12522172-12522890,12523567-12524596                       25   8.2  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 168 GKSTTTGHLIYKFCGIDKR 224
           GKSTTTGHLIYK  GIDKR
Sbjct: 19  GKSTTTGHLIYKLGGIDKR 37



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 113 MGKEKVHINIVVIGH 157
           MGKEK HINIVVIGH
Sbjct: 1   MGKEKTHINIVVIGH 15


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 168 GKSTTTGHLIYKFCGIDKR 224
           GKSTTTGHLIYK  GIDKR
Sbjct: 19  GKSTTTGHLIYKLGGIDKR 37



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 113 MGKEKVHINIVVIGH 157
           MGKEK HINIVVIGH
Sbjct: 1   MGKEKTHINIVVIGH 15


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 168 GKSTTTGHLIYKFCGIDKR 224
           GKSTTTGHLIYK  GIDKR
Sbjct: 19  GKSTTTGHLIYKLGGIDKR 37



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 113 MGKEKVHINIVVIGH 157
           MGKEK HINIVVIGH
Sbjct: 1   MGKEKTHINIVVIGH 15


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 168 GKSTTTGHLIYKFCGIDKR 224
           GKSTTTGHLIYK  GIDKR
Sbjct: 19  GKSTTTGHLIYKLGGIDKR 37



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 113 MGKEKVHINIVVIGH 157
           MGKEK HINIVVIGH
Sbjct: 1   MGKEKTHINIVVIGH 15


>06_02_0166 + 12522172-12522890,12523567-12524596
          Length = 582

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 219 CRYHRICRSSDQLLWTCRSRRCPMTTMLM*TFSLPI 112
           C    +C S    L  CR+RRC + ++    F L +
Sbjct: 108 CLLLMVCSSVGSGLSVCRTRRCALASLCFFRFLLGV 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,673,679
Number of Sequences: 37544
Number of extensions: 85056
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)