Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_I03
(224 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 38 7e-04
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 38 7e-04
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 38 7e-04
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 38 7e-04
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 38 7e-04
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 2.4
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 2.4
AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical ... 27 2.4
AF003147-1|AAB54205.2| 569|Caenorhabditis elegans Hypothetical ... 25 5.5
AL110484-18|CAB54409.1| 357|Caenorhabditis elegans Hypothetical... 25 7.2
AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA ... 25 9.6
AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid de... 25 9.6
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEKVHINIVVIGH
Sbjct: 1 MGKEKVHINIVVIGH 15
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEKVHINIVVIGH
Sbjct: 1 MGKEKVHINIVVIGH 15
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEKVHINIVVIGH
Sbjct: 1 MGKEKVHINIVVIGH 15
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEKVHINIVVIGH
Sbjct: 1 MGKEKVHINIVVIGH 15
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 168 GKSTTTGHLIYKFCGIDKR 224
GKSTTTGHLIYK GIDKR
Sbjct: 19 GKSTTTGHLIYKCGGIDKR 37
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 113 MGKEKVHINIVVIGH 157
MGKEKVHINIVVIGH
Sbjct: 1 MGKEKVHINIVVIGH 15
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 96 LLDSLFHFTKLFLQTLTTD 40
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 96 LLDSLFHFTKLFLQTLTTD 40
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
>AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical
protein Y45F10B.14 protein.
Length = 320
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 128 PFLCPFLVSGYF*IHFFTSLNYFFRHSP--RITIRL 27
PF F++SG I FF+ FF SP RI +R+
Sbjct: 263 PFFENFIMSGLVLIPFFSPFTSFFFFSPYKRIVLRI 298
>AF003147-1|AAB54205.2| 569|Caenorhabditis elegans Hypothetical
protein C11D9.1 protein.
Length = 569
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 121 RKGSH*HCRHRTPSTPASPQQL 186
R G H R +TP TP +P QL
Sbjct: 183 RIGKVIHLRRKTPLTPRAPSQL 204
>AL110484-18|CAB54409.1| 357|Caenorhabditis elegans Hypothetical
protein Y38E10A.18 protein.
Length = 357
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 222 VCRYHRICRSSDQLLWTCRSRR 157
+CRY C+ S L + CRS R
Sbjct: 48 LCRYSNNCQISQDLRFICRSCR 69
>AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-7 protein.
Length = 338
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 121 FAHFWLVVTFRFTFSLH*T--ISSDTHH 44
F F++ TFR+ F+LH T I+S H+
Sbjct: 219 FIAFYVAGTFRYCFTLHATWCINSAAHY 246
>AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid
desaturase protein 7 protein.
Length = 338
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 121 FAHFWLVVTFRFTFSLH*T--ISSDTHH 44
F F++ TFR+ F+LH T I+S H+
Sbjct: 219 FIAFYVAGTFRYCFTLHATWCINSAAHY 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,944,942
Number of Sequences: 27780
Number of extensions: 79200
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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