Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I02
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia relate...    28   2.2  
U41991-11|AAA83351.2|  199|Caenorhabditis elegans Hypothetical p...    26   9.0  

>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 275 IILFLIYSNINLVSFALHYIY*VFSLYFFNIGIKLSI 385
           +I+FL     N++SFAL++IY +    F  IGI L +
Sbjct: 89  LIVFLPEYFSNIISFALNFIYWIAYCIFTFIGIILDV 125


>Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical
           protein F23B2.6 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -2

Query: 400 TAEQLDAELDAYV 362
           TAEQLDAELDAY+
Sbjct: 211 TAEQLDAELDAYM 223


>U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia related
           kinase protein 1 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 86  LIFGNILNKEMILVRKKKKKNSRLVLP 6
           ++F  IL KE+I   KKKKK S + LP
Sbjct: 75  VVFNRILKKELIESYKKKKKISWIGLP 101


>U41991-11|AAA83351.2|  199|Caenorhabditis elegans Hypothetical
           protein C42D4.13 protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 IPYLFKYQFSVFCTS-LYILSVFTLFL*HRHQAQHPVVL 396
           IP+ F + FS+     L ILS+FTL + H H  Q P+ L
Sbjct: 6   IPFFF-HPFSIITMKYLSILSIFTLSMFHIH-CQQPLPL 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,138,318
Number of Sequences: 27780
Number of extensions: 122387
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)