Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_I01
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    27   2.1  
01_01_0594 + 4420381-4421898                                           27   2.8  
11_05_0012 - 18380988-18381285,18382394-18382434                       25   6.4  
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    25   8.5  

>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 35  PRADSAEGLWLSSNYIL*N----YYFK*AISFEIISENGRSTS 151
           P  DSAE     S Y++ +    Y  K   SFE++ +NGRS S
Sbjct: 363 PNGDSAESQDYLSFYLILDSANSYDVKVIFSFELLGKNGRSVS 405


>01_01_0594 + 4420381-4421898
          Length = 505

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   WIPRAAGFRHEASCRF 48
           W+  A  FRHE SC+F
Sbjct: 426 WLTPAGRFRHERSCKF 441


>11_05_0012 - 18380988-18381285,18382394-18382434
          Length = 112

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  ARGLVPIRQRDCGYRVIIYFEIIILNKRYRLKL*VKMGEV 146
           ARG++P     CG    ++ E ++L+K   ++    M EV
Sbjct: 2   ARGVLPAGHASCGITGSVHGENVLLDKLIHIRGGATMSEV 41


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 5   SPALQDFGTRPRADSAEGLWLSSN 76
           SP+L D   R R    +GLW+SS+
Sbjct: 48  SPSLHDVALRFRLLRQQGLWVSSD 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,599,563
Number of Sequences: 37544
Number of extensions: 85535
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)