Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H24
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0546 - 9381989-9383733,9385838-9386054 64 2e-11
03_02_0540 + 9340379-9340592,9341250-9342988 64 2e-11
11_08_0075 + 28173220-28173433,28175348-28177083 62 4e-11
05_05_0109 - 22454539-22456268,22457069-22457279 62 4e-11
03_06_0484 + 34233042-34233258,34235317-34237049 62 4e-11
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 62 4e-11
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 61 1e-10
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 60 2e-10
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231 60 3e-10
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 60 3e-10
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 57 2e-09
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 57 2e-09
03_02_0542 - 9348126-9349585,9352433-9352655 57 2e-09
08_01_0654 - 5639419-5641449 56 3e-09
05_04_0392 - 20889699-20891726 56 3e-09
12_02_0825 + 23476943-23476952,23477263-23477328,23477737-234778... 56 5e-09
11_01_0564 - 4447078-4448519,4449465-4449711 55 7e-09
05_04_0052 - 17515344-17517353 55 9e-09
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 53 4e-08
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836 51 1e-07
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 48 1e-06
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 38 0.001
12_01_0346 + 2652181-2653566 37 0.002
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 36 0.003
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 31 0.095
04_04_1423 - 33455818-33457076,33457165-33457201 30 0.29
03_02_0180 - 6211823-6213559 27 2.1
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG ISGLNV+RIINEPTAA
Sbjct: 152 PAYFNDSQRQATKDAGVISGLNVMRIINEPTAA 184
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG ISGLNV+RIINEPTAA
Sbjct: 151 PAYFNDSQRQATKDAGVISGLNVMRIINEPTAA 183
>11_08_0075 + 28173220-28173433,28175348-28177083
Length = 649
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GLNV+RIINEPTAA
Sbjct: 151 PAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 183
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GLNV+RIINEPTAA
Sbjct: 150 PAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 182
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GLNV+RIINEPTAA
Sbjct: 152 PAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 184
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GLNV+RIINEPTAA
Sbjct: 343 PAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 375
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAGTI+GLNV RIINEPTAA
Sbjct: 181 PAYFNDAQRQATKDAGTIAGLNVPRIINEPTAA 213
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAG I+GLNV RIINEPTAA
Sbjct: 177 PAYFNDAQRQATKDAGVIAGLNVARIINEPTAA 209
>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
Length = 270
Score = 59.7 bits (138), Expect = 3e-10
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GL VLRIINEPTAA
Sbjct: 192 PAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 224
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 59.7 bits (138), Expect = 3e-10
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFNDSQ ATKDAG I+GL VLRIINEPTAA
Sbjct: 125 PAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 157
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAG I+GL+V RIINEPTAA
Sbjct: 174 PAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA 206
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAG I+GL+V RIINEPTAA
Sbjct: 194 PAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA 226
>03_02_0542 - 9348126-9349585,9352433-9352655
Length = 560
Score = 56.8 bits (131), Expect = 2e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFNDSQ AT DAG ++GL+VLRIINEPTAA
Sbjct: 154 PVYFNDSQRQATMDAGAVAGLDVLRIINEPTAA 186
>08_01_0654 - 5639419-5641449
Length = 676
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAG I+GL V RIINEPTAA
Sbjct: 189 PAYFNDAQRQATKDAGVIAGLTVDRIINEPTAA 221
>05_04_0392 - 20889699-20891726
Length = 675
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDAG I+GL V RIINEPTAA
Sbjct: 189 PAYFNDAQRQATKDAGVIAGLTVDRIINEPTAA 221
>12_02_0825 +
23476943-23476952,23477263-23477328,23477737-23477885,
23478148-23478212,23479247-23479710,23479724-23480208
Length = 412
Score = 55.6 bits (128), Expect = 5e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFN SQ ATKDA I+GLNV+RIINEPTAA
Sbjct: 181 PAYFNYSQRQATKDARVIAGLNVMRIINEPTAA 213
>11_01_0564 - 4447078-4448519,4449465-4449711
Length = 562
Score = 55.2 bits (127), Expect = 7e-09
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFN++Q AT DAG I+GLNV+RIINEPTAA
Sbjct: 162 PVYFNNAQRQATMDAGAIAGLNVMRIINEPTAA 194
>05_04_0052 - 17515344-17517353
Length = 669
Score = 54.8 bits (126), Expect = 9e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
PAYFND+Q ATKDA TI+GL V RI+NEPTAA
Sbjct: 184 PAYFNDAQRQATKDAATIAGLAVERILNEPTAA 216
>11_01_0563 +
4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFN++Q AT DA TI+GLNV+RIINEP+AA
Sbjct: 159 PVYFNNAQREATLDAATIAGLNVMRIINEPSAA 191
Score = 50.8 bits (116), Expect = 1e-07
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFN++Q AT DA I+GLNV+RIINEP+AA
Sbjct: 785 PVYFNNAQREATLDAAAIAGLNVMRIINEPSAA 817
>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
Length = 526
Score = 50.8 bits (116), Expect = 1e-07
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFN++Q AT DA I+GLNV+RIINEP+AA
Sbjct: 95 PVYFNNAQREATLDAAAIAGLNVMRIINEPSAA 127
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YFND+Q A DAG I+GL+V+RI++EP AA
Sbjct: 180 PVYFNDAQRRAISDAGDIAGLDVMRIVSEPIAA 212
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTA 96
PAYF D Q A DA I+GL LR+ +E TA
Sbjct: 145 PAYFTDLQRRAVADAAAIAGLRPLRLFHETTA 176
>12_01_0346 + 2652181-2653566
Length = 461
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YF+D A +A ++GL +RII+EPTAA
Sbjct: 185 PYYFSDGPREAAMNAARMAGLTTVRIIDEPTAA 217
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTA 96
P YF D Q A DA TI+GL LR+ +E TA
Sbjct: 145 PVYFTDLQRRAVLDAATIAGLCPLRLFHETTA 176
>02_05_0491 +
29470575-29471351,29471574-29471806,29472697-29472856,
29473149-29473394,29473492-29473628,29473874-29474207,
29474283-29474444,29474717-29474791,29474866-29474966,
29475042-29475111,29475210-29475266,29475357-29475418,
29475505-29475577,29475663-29475884
Length = 902
Score = 31.5 bits (68), Expect = 0.095
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTAA 99
P YF ++ A A ++G+NVL +INE A
Sbjct: 175 PPYFGQAERRALTQAAQLAGVNVLALINEHAGA 207
>04_04_1423 - 33455818-33457076,33457165-33457201
Length = 431
Score = 29.9 bits (64), Expect = 0.29
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 67 HSDQRWYPHLSWHAFES 17
H Q WYP WH FE+
Sbjct: 319 HGSQEWYPRWVWHRFEA 335
>03_02_0180 - 6211823-6213559
Length = 578
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 1 PAYFNDSQMHATKDAGTISGLNVLRIINEPTA 96
P F+ Q + A ++GL+VLR++ EPTA
Sbjct: 177 PVAFSRFQQTRIERACAMAGLHVLRLMPEPTA 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,595
Number of Sequences: 37544
Number of extensions: 23759
Number of successful extensions: 77
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 14
effective length of database: 14,267,732
effective search space used: 256819176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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