Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H21
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 72 2e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 44 3e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 41 4e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 41 4e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 35 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.007
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 1.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 2.5
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 24 3.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 3.4
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 5.9
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 5.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 5.9
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 23 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 71.7 bits (168), Expect = 2e-14
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 110 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIV 35
Score = 33.5 bits (73), Expect = 0.005
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 186 PAPYFPRSWGDLVTRAVMVGMGQKDSYVG 272
P FP G +MVGMGQKDSYVG
Sbjct: 27 PRAVFPSIVGRPRHHGIMVGMGQKDSYVG 55
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 44.4 bits (100), Expect = 3e-06
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
+ +DNGSG KAGFAGDD P+ +FP+ V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCV 39
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.7 bits (91), Expect = 4e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 40.7 bits (91), Expect = 4e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 116 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
E A +V+DNG+G K G+A D+ PR FPSIV
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIV 33
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.7 bits (86), Expect = 1e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 205
+EV+A+V+D GS + GF+G+D P+ V PS
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.1 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 113 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 205
EE+ +LV+D GS + G+AG+++P + PS
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS 38
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.1 bits (72), Expect = 0.007
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 128 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 211
LV+DNGS +AG+ G+ P+ VF ++V
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLV 54
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 120 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 212
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 128 LVVDNGSGMCKAGFAG 175
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -2
Query: 244 PTMTALVTRSPHDRGKYGAGSVVSRETGFAHSGPIVYDQRGNFLVAH 104
P+ AL + + + GS+ R+ G ++ +V+D G + H
Sbjct: 106 PSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVH 152
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 160 FAHSGPIVYDQRGNFLV 110
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 210 TIEGNTARGASSPAKPALHIPDPLSTT 130
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 159 LHIPDPLSTTNAATSSSHI 103
+H PD LS N++ S +H+
Sbjct: 369 IHYPDDLSYFNSSRSKAHV 387
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 177 SPAKPALHIPDPLSTTNAATSSS 109
+P P PL+TTN TS+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 211 HDRGKYGAGSVVSRETGFAHSGPIVYDQRGN 119
+ RG Y GSV RET G V R N
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 163 GFAHSG-PIVYDQRGNFLVAH 104
G+ SG P+V D R N+L+ +
Sbjct: 649 GYDFSGYPVVLDSRSNYLIGY 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,180
Number of Sequences: 5004
Number of extensions: 14048
Number of successful extensions: 49
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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