Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H19
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   262   3e-70
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   262   3e-70
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   262   3e-70
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   262   3e-70
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   203   2e-52

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  262 bits (643), Expect = 3e-70
 Identities = 119/142 (83%), Positives = 128/142 (90%)
 Frame = +2

Query: 14  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
           D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
           LGRKKGAKLT  EE I+NKKRS
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRS 142


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  262 bits (643), Expect = 3e-70
 Identities = 119/142 (83%), Positives = 128/142 (90%)
 Frame = +2

Query: 14  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
           D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
           LGRKKGAKLT  EE I+NKKRS
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRS 142


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  262 bits (643), Expect = 3e-70
 Identities = 119/142 (83%), Positives = 128/142 (90%)
 Frame = +2

Query: 14  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
           D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
           LGRKKGAKLT  EE I+NKKRS
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRS 142


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  262 bits (643), Expect = 3e-70
 Identities = 119/142 (83%), Positives = 128/142 (90%)
 Frame = +2

Query: 14  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
           D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
           LGRKKGAKLT  EE I+NKKRS
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRS 142


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  203 bits (496), Expect = 2e-52
 Identities = 103/142 (72%), Positives = 111/142 (78%)
 Frame = +2

Query: 14  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG         
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51

Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
                     C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52  ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100

Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
           LGRKKGAKLT  EE I+NKKRS
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRS 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,024,928
Number of Sequences: 237096
Number of extensions: 1787825
Number of successful extensions: 3147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3147
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)