Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H19
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 224 3e-59
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.12
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.12
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.12
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.12
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.64
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.64
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.64
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 3.4
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 224 bits (547), Expect = 3e-59
Identities = 102/142 (71%), Positives = 118/142 (83%)
Frame = +2
Query: 14 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 373
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 374 LGRKKGAKLTEAEEAIINKKRS 439
L RKK AKL+E + AI+NKKRS
Sbjct: 121 LARKKNAKLSEEDNAILNKKRS 142
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.64
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.64
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.64
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 224 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 346
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,446
Number of Sequences: 27780
Number of extensions: 243808
Number of successful extensions: 620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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