Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H17
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 0.76
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 26 1.8
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 26 2.3
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 3.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 3.1
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 4.1
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 25 4.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 5.4
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 5.4
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 25 5.4
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 24 9.4
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 24 9.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 24 9.4
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 0.76
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 326 VNIPAEYSVLAHVSE*HHLSWAVDSVRPALRLRASCTFHIELSSEILPPALQDLRIDGKL 147
V++P E+ +L ++ + HL + + +V RL + I+ +D +I K
Sbjct: 332 VHVPGEHPILYYIHKRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKR 391
Query: 146 LFGNQRMVVSSSFV 105
+ +V SSFV
Sbjct: 392 YYRQHCALVDSSFV 405
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 285 ANVGQDAILCWNINTPLIPSHVA 353
A VG D I W N+PL H+A
Sbjct: 899 AFVGADEIFLWKRNSPLAADHIA 921
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 35 CCWKRYQLERWPVQYSIIATR 97
C + Y +WP+ YS+IA+R
Sbjct: 496 CVAEDYDRSKWPMLYSLIASR 516
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 55 IGKMACSV*HYRHPITVTNEEL 120
IGK+AC+ YR+ +T T E++
Sbjct: 30 IGKIACNENKYRYEMTSTEEDI 51
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 175 FKICVSTENSCLETR 131
FK CVS EN C+ R
Sbjct: 26 FKTCVSNENGCINCR 40
>SPAC6G9.12 |cfr1||Chs five related protein
Cfr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 82 AILNRPSFQLITFPATVKLSDASS 11
AIL PSF +I FP+ + +DA++
Sbjct: 19 AILLTPSFHIIEFPSVLLPNDATA 42
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 4.1
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = -3
Query: 311 EYSVLAHVSE*HHLSWAVDSVRPALRLRASCTFHIELSSEILPPALQDLRIDGKLLFGNQ 132
++ VLAH + HLS+ V S+RPAL + + + A + L + K L +
Sbjct: 145 KWFVLAHNA---HLSFDVKSLRPALYINLE-----NANPSVREEAKEVLLLIYKNLSTSA 196
Query: 131 RMVVSSSFVTVIGWR*CYTEQAIFPIDNVSSNSEV 27
+M + T G R + + + +SS+SEV
Sbjct: 197 KMQFITDVETTSGLRREILQSLVEELSLISSSSEV 231
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 194 EILPPALQDLRIDGKLLFGNQRMVV 120
E+L P L + GKL GN +++V
Sbjct: 65 EVLVPLTSSLYVPGKLNLGNSKLLV 89
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 5.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCWNINTPLIPSHVAVVAQ 365
R PKTQ +H I G +F++ G+ + + W + S V + Q
Sbjct: 625 RSPKTQFNSHLIWGLVGNHIFSSDGRYSFVMWFFLVGAVVSVVVYLLQ 672
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 269 SWAVDSVRPALRLRASCTFHIELSSEILPPALQDLRIDG 153
SW +D+V +L + + ++LP +QD R G
Sbjct: 737 SWGIDTVDAKFKLILQLLSLLMVKIDVLPAVMQDKRKAG 775
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 5.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 292 TLANSITLVGPWIACAQLCVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLETRG 128
T +N +TL G +ACA +C+L P + A S P ++ +S + + G
Sbjct: 192 TDSNPMTLTG--MACADICLLRPEEALSSLKTALDSQPNYEEALSNMTTAITDLG 244
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 102 CNKRRAYYHPLVSKQEFS 155
C ++ A YHP V Q+F+
Sbjct: 133 CQRKTANYHPEVDVQDFT 150
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 226 PLVPSTLNSLAKFSPPLF 173
P + STL +AKF P +F
Sbjct: 271 PALASTLEEIAKFGPEVF 288
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 111 RRAYYHPLVSKQEFSVDTQILKSGGENFAREFNV 212
R+AY L ++ S+D + K+ E RE+++
Sbjct: 544 RKAYDEELAKAKQISLDIETNKAQTEQVNREYSI 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,649
Number of Sequences: 5004
Number of extensions: 29458
Number of successful extensions: 78
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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