Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H17
(385 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62317-2|AAB03340.1| 598|Homo sapiens protein ( Homo sapiens ch... 32 0.73
BC047527-1|AAH47527.1| 824|Homo sapiens mitogen-activated prote... 32 0.73
BC009940-1|AAH09940.2| 443|Homo sapiens mitogen-activated prote... 32 0.73
AL021708-1|CAA16714.1| 467|Homo sapiens protein ( Homo sapiens ... 32 0.73
AF218778-1|AAF32323.1| 797|Homo sapiens islet-brain 2 protein. 32 0.73
AF136382-1|AAF00980.1| 824|Homo sapiens JNK MAP kinase scaffold... 32 0.73
U79261-1|AAB50207.1| 226|Homo sapiens unknown protein. 29 3.9
S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase... 29 3.9
BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein. 29 3.9
BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein. 29 3.9
AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransfera... 29 3.9
AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransfera... 29 3.9
AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransfera... 29 3.9
AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransfera... 29 3.9
AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransfera... 29 3.9
AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransfera... 29 3.9
BC011739-1|AAH11739.1| 190|Homo sapiens apolipoprotein B mRNA e... 28 8.9
>U62317-2|AAB03340.1| 598|Homo sapiens protein ( Homo sapiens
chromosome 22q13 BAC clone CIT987SK-384D8 complete
sequence. ).
Length = 598
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 299 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 356
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 357 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 384
>BC047527-1|AAH47527.1| 824|Homo sapiens mitogen-activated protein
kinase 8 interacting protein 2 protein.
Length = 824
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 594 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 651
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 652 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 679
>BC009940-1|AAH09940.2| 443|Homo sapiens mitogen-activated protein
kinase 8 interacting protein 2 protein.
Length = 443
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 213 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 270
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 271 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 298
>AL021708-1|CAA16714.1| 467|Homo sapiens protein ( Homo sapiens
partial cDNA homologous to M.musculus JIP-1 gene. ).
Length = 467
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 237 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 294
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 295 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 322
>AF218778-1|AAF32323.1| 797|Homo sapiens islet-brain 2 protein.
Length = 797
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 567 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 624
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 625 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 652
>AF136382-1|AAF00980.1| 824|Homo sapiens JNK MAP kinase scaffold
protein JIP2 protein.
Length = 824
Score = 31.9 bits (69), Expect = 0.73
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +3
Query: 66 GLFSIALSPPDNCNKRRAYY-----HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GT 221
GLFS ++ + RA + HP + E VD +L E+ + R FN+ G
Sbjct: 594 GLFSCLVNGEEREQTHRAVFRFIPRHP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGE 651
Query: 222 RGPKTQSWAHAIHGPTKVMLFANVGQDAILCW 317
RG +AHA+ GP K +L G CW
Sbjct: 652 RGVFPAFYAHAVPGPAKDLL----GSKRSPCW 679
>U79261-1|AAB50207.1| 226|Homo sapiens unknown protein.
Length = 226
Score = 29.5 bits (63), Expect = 3.9
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 126 HPLVSKQEFSVDTQILKSGGEN--FAREFNVE-GTRGPKTQSWAHAIHGPTKVMLFANVG 296
HP + E VD +L E+ + R FN+ G RG +AHA+ GP K +L G
Sbjct: 21 HP--DELELDVDDPVLVEAEEDDFWFRGFNMRTGERGVFPAFYAHAVPGPAKDLL----G 74
Query: 297 QDAILCW 317
CW
Sbjct: 75 SKRSPCW 81
>S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase
protein.
Length = 748
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702
>BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584
>BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584
>AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584
>AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 586 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 620
>AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702
>AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584
>AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 586 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 620
>AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
C GP+VP+ + P C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702
>BC011739-1|AAH11739.1| 190|Homo sapiens apolipoprotein B mRNA
editing enzyme, catalytic polypeptide-like 3C protein.
Length = 190
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 12 DEASLNFTVAG----NVINWKDGLFSIALSPPDNCNKRRAY 122
DE L FTV G +V++WK G+F + +C+ R +
Sbjct: 31 DETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCF 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,466,777
Number of Sequences: 237096
Number of extensions: 1119277
Number of successful extensions: 5913
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5913
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -