Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H17
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine...    27   3.4  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone...    26   7.9  
U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    26   7.9  

>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 313 QSIASWPTLANSITLVGPWIACAQLCVLGPLV 218
           + IA+W T+ N +T++ P  AC +   + PL+
Sbjct: 182 EEIATWRTVYNELTVMYPKNACQEFNYIFPLL 213


>AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine
           hydroxylase protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 313 QSIASWPTLANSITLVGPWIACAQLCVLGPLV 218
           + IA+W T+ N +T++ P  AC +   + PL+
Sbjct: 182 EEIATWRTVYNELTVMYPKNACQEFNYIFPLL 213


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 228 PKTQSWAHAIHGPTKVMLFANVGQDAILCWNINTPLIPSHVAVVAQD 368
           P T +     + P  V+L +    D +  WN+  P +PS+V  V ++
Sbjct: 150 PCTPAIVRLFNIPKTVLLSSEAIMDKV-AWNLGLPTLPSYVPSVEEN 195


>U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform d protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 243 WAHAIHGPTKVMLFANVGQDAILCWNINTPLIPSHVAV 356
           WA       ++ LF  VG     CW I   ++P + AV
Sbjct: 255 WAKTFDVYQRLNLFDQVGTRNFGCWGIEVFILPKNYAV 292


>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 289 LANSITLVGPWIACAQLCVLGPLVPSTLNSLAK 191
           +A  IT +GP++A    C+L  +V   L S+ +
Sbjct: 397 MALVITTIGPYLASLPSCILSAIVIVVLESMLR 429


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 289 LANSITLVGPWIACAQLCVLGPLVPSTLNSLAK 191
           +A  IT +GP++A    C+L  +V   L S+ +
Sbjct: 397 MALVITTIGPYLASLPSCILSAIVIVVLESMLR 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,588,116
Number of Sequences: 27780
Number of extensions: 161223
Number of successful extensions: 426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)