Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H16
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 37 7e-04
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 29 0.19
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 27 0.59
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 0.78
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 0.78
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 1.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 2.4
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 24 4.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 24 4.2
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 24 5.5
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 5.5
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 23 7.3
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 23 7.3
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 23 9.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 23 9.6
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 23 9.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 23 9.6
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 36.7 bits (81), Expect = 7e-04
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +1
Query: 10 KDDVNRINSEYTKYLQTEYEAATSYKPEV-SYYQEQWSTMTSAPNAVE----IWDTGVDA 174
K +V+ L++ +E++ +YK + + W S + + + TGV+
Sbjct: 545 KAEVDAQEKRVWDILESSFESSKNYKSDHREWLSNPWVGFASPKDLMTKILPSYPTGVNI 604
Query: 175 SVLKLVGEASVKTPEAINIHPHVAKTHVKDRLSRLSEGKGID 300
LK +G+A PE + H ++ K + +R +S G+GID
Sbjct: 605 DTLKQIGKALYTLPEGFDAHRNL-KRILNNRNKSISSGEGID 645
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.7 bits (61), Expect = 0.19
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 292 LCPHSVLIIDLSHESSLHADV 230
L +SV+IID +HE +LH D+
Sbjct: 530 LASYSVIIIDEAHERTLHTDI 550
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 0.59
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 91 EVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKL 189
EVS+++ WST++ V ++DT ++L+L
Sbjct: 243 EVSHFENFWSTISYPDCKVRVFDTKSGRAILEL 275
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 0.78
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 290 LPSLSLDNRSFT*VFATCGCILIASGVLTDASPTSFNTLASTPVSQISTAFGADVI 123
L S S DN + + V T +AS V TD++ + +++ + S +ST + +I
Sbjct: 172 LSSASTDNLAAS-VTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSII 226
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 0.78
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 40 YTKYLQTEYEAATSYKPEVSY 102
Y YL++ Y+ T++ PE+ Y
Sbjct: 185 YNNYLKSPYQQPTNFPPEIQY 205
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 124 MTSAPNAVEIWDTGVDASVLKLVGEASVKTPE 219
++SAP E+W G+ + + L+G+A E
Sbjct: 409 LSSAPKDFELWVQGMSSKMFVLLGKARYSLTE 440
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.0 bits (52), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 43 TKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGEASVKT 213
T Y++T Y + V Y +T+T AP+ + DT V+ G +V T
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDT-VEVPTTTNYGYTTVTT 324
Score = 25.0 bits (52), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 43 TKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGEASVKT 213
T Y++T Y + V Y +T+T AP+ + DT V+ G +V T
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDT-VEVPTTTNYGYTTVTT 402
Score = 25.0 bits (52), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 43 TKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGEASVKT 213
T Y++T Y + V Y +T+T AP+ + DT V+ G +V T
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDT-VEVPTTTNYGYTTVTT 636
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 43 TKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDT 162
T Y++T Y + V Y +T+T AP+ + DT
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDT 464
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 43 TKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDT 162
T Y++T Y + V Y +T+T AP+ + DT
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDT 542
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 KDDVNRINSEYTKY-LQTEYEAATSYKPEVSYYQEQW 117
KD + I S+Y+ + Y TS + + YYQE W
Sbjct: 522 KDAIAGIVSKYSGCSISDGYSFVTSLEKKNRYYQETW 558
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 32 ILSILNICRQSTKPLHLINQRYRITKNN 115
ILS+L + ++ + Q+Y + KNN
Sbjct: 136 ILSLLRVVTFDKDQVYAVGQKYNLDKNN 163
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 127 TSAPNAVEIWDTGVDASVLKLVGEASVKTPEAI 225
TS V +WD D V G A K P +
Sbjct: 194 TSRDKKVRVWDPRTDKPVSVGNGHAGAKNPRVV 226
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 85 KPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKL 189
KP +SY QW+ + P++ ++ G + + L L
Sbjct: 130 KPNISYVNPQWNELDYRPDSQKL-SPGKEKNTLDL 163
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 203 DASPTSFNTLASTPVSQISTAF 138
+A P++ +ASTPV+Q+ AF
Sbjct: 503 NAFPSNPTYIASTPVTQLRRAF 524
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 61 EYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGE 198
E + T Y ++ Y+ WS + + V + +D VLK VG+
Sbjct: 122 ERDYLTRYSELLAAYKGAWSELDLTGSLVPPKNLFIDVRVLKDVGD 167
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 31 NSEYTKYLQTEYEAATSYKPEVSYYQEQWSTMTSA 135
+ Y LQ +YE T K + +EQW ++ +
Sbjct: 34 DERYLDVLQ-QYEVETENKRDFDLEEEQWGVLSGS 67
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 227 LIASGVLTDASPTSFNTLASTPVSQISTA 141
LIA + T AS S + +AST S ++ +
Sbjct: 288 LIAQNLHTSASQVSLSPMASTASSSVTNS 316
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 240 MRMYINSLWRLN*RFTD*FQYTRIYSGVPD 151
MR+++ SL ++ F+YT +YS P+
Sbjct: 132 MRVFLQSLSNMSYLSPSKFRYTTVYSKQPN 161
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 99 RYLWFIRCSG 70
R +WFIRC+G
Sbjct: 177 RAIWFIRCAG 186
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 292 LCPHSVLIIDLSHESSLHADV 230
L +S +I+D +HE S++ D+
Sbjct: 513 LTAYSAVIVDEAHERSVNTDI 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.125 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,180,818
Number of Sequences: 5004
Number of extensions: 21365
Number of successful extensions: 70
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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