Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H16
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   0.35 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 0.35
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 28  INSEYTKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGEASV 207
           ++S    Y+ TE    + Y+    +YQ + + + +  +A  I D GV      LVG+ S+
Sbjct: 268 LSSHNLNYVNTEQFVKSQYQANNVHYQGKENILWTQASAKGISDNGV--LFFGLVGDTSL 325


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 117 PLFLVIRYLWFI 82
           PLFL+I   WFI
Sbjct: 228 PLFLIIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 117 PLFLVIRYLWFI 82
           PLFL+I   WFI
Sbjct: 104 PLFLIIYSYWFI 115


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 260 FT*VFATCGCILIASGVL 207
           F  VFA CG  ++  GVL
Sbjct: 15  FNFVFAVCGLGILTLGVL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,663
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)