Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H15
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    24   2.8  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    23   4.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   4.9  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    23   6.4  

>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 107 LGSLKCFIKRLLAKMNVLFIRNICSAGRQAIMCFLMSAS 223
           L ++    +RL A ++V  I+ I  AG+Q    FL+  S
Sbjct: 59  LDAIDLLFERLKASVDVSKIQAISGAGQQHASVFLLKGS 97


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 AGDYVLFDVCINIYLIIFLWRR 255
           A   V+F V + +YL+I  WRR
Sbjct: 2   ASTQVVFIVTLFLYLLITRWRR 23


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 101  F*DNFSLKYFCYSVIF*IV*KIMNSIPS 18
            F  NFS +Y C+S I  I+  I N IP+
Sbjct: 3516 FRKNFSYQYACFSFITYIL-SINNRIPA 3542


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 186 PAEQMFLMNNTFILANKR 133
           P + +FL++NT + ANK+
Sbjct: 242 PHDMVFLISNTLVEANKQ 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,382
Number of Sequences: 5004
Number of extensions: 14148
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)