Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H15
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    25   7.4  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z92784-7|CAE54895.1|  808|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z92784-6|CAB07197.1|  805|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z81526-9|CAE54892.1|  808|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z81526-8|CAB04268.1|  805|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 243 KYDKVNIDADIKKHIIACLPAEQMFLMNNTFILAN 139
           KYDKV +  D+KK I +    E   L +  ++L +
Sbjct: 498 KYDKVIMACDLKKDIFSLPRCEATVLGDKGYVLTS 532


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 60  NILNCLKNYEFNSLVPILQ 4
           N+ NC KN++F S  P LQ
Sbjct: 99  NVDNCTKNHDFMSSDPALQ 117


>Z92784-7|CAE54895.1|  808|Caenorhabditis elegans Hypothetical
           protein F31C3.2b protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 63  SNILNCLKNYEFNSLVPILQP 1
           S +LNC  + E   L+P +QP
Sbjct: 104 SKLLNCASDEEVKELIPQVQP 124


>Z92784-6|CAB07197.1|  805|Caenorhabditis elegans Hypothetical
           protein F31C3.2a protein.
          Length = 805

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 63  SNILNCLKNYEFNSLVPILQP 1
           S +LNC  + E   L+P +QP
Sbjct: 104 SKLLNCASDEEVKELIPQVQP 124


>Z81526-9|CAE54892.1|  808|Caenorhabditis elegans Hypothetical
           protein F31C3.2b protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 63  SNILNCLKNYEFNSLVPILQP 1
           S +LNC  + E   L+P +QP
Sbjct: 104 SKLLNCASDEEVKELIPQVQP 124


>Z81526-8|CAB04268.1|  805|Caenorhabditis elegans Hypothetical
           protein F31C3.2a protein.
          Length = 805

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 63  SNILNCLKNYEFNSLVPILQP 1
           S +LNC  + E   L+P +QP
Sbjct: 104 SKLLNCASDEEVKELIPQVQP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,116,113
Number of Sequences: 27780
Number of extensions: 78596
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)