Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H14
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 91 6e-20
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 87 1e-18
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 1.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.9
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 4.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 4.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 4.4
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 5.8
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 91.5 bits (217), Expect = 6e-20
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVSPH 314
+K A +RT S + NMI GVT+GF+YKMR V H
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAH 96
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 343 MREN-TIIEIRNFLGEKYIR 399
+ EN T++EIRNFLGE+ R
Sbjct: 103 LTENGTVVEIRNFLGERITR 122
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 407 VKMAPGVTVVNSPKQKDELII 469
+K PGVTV S KDE+II
Sbjct: 124 IKCLPGVTVSISSAVKDEIII 144
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/95 (43%), Positives = 63/95 (66%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVSPH 314
+K A +R+V S + NMI GVT+GF+YKMR V H
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAH 96
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 343 MREN-TIIEIRNFLGEKYIR 399
+ EN T++EIRNFLGE+ R
Sbjct: 103 LTENGTVVEIRNFLGERITR 122
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 407 VKMAPGVTVVNSPKQKDELII 469
+K PGVTV S KDE+I+
Sbjct: 124 IKCLPGVTVSISSAVKDEIIL 144
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 55 TFWFATICFILGLC 14
TFWF +IC IL +C
Sbjct: 281 TFWFQSICLILYIC 294
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +3
Query: 90 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 269
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 270 VTK 278
++K
Sbjct: 1170 LSK 1172
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 246 HVENMIKGVTKGFQYKMRAVSPHSYN 323
H E I+ VT G + K R +SP N
Sbjct: 531 HFEQAIERVTAGLEKKSRVLSPEEKN 556
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 223 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 134
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 323 VIGMGRHGTHLVLESLGHTFDHVFDMRAYCPNSS*FFFRTEPFLHFQLARIN 168
++ G HG HLV+ + + ++ +CP+ R EP+ Q R N
Sbjct: 592 LLEQGHHGPHLVVVPSSTLENWLRELARFCPS-----LRVEPYYGSQQERAN 638
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 125 NSARTFHCHQTRFHMDGETLRNLH 54
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,470
Number of Sequences: 5004
Number of extensions: 42985
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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