Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H14
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    115   2e-26
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   107   6e-24
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    30   1.1  
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254...    29   2.5  
11_04_0312 - 16259612-16260231,16260264-16262796                       27   7.6  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  115 bits (277), Expect = 2e-26
 Identities = 51/97 (52%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
 Frame = +3

Query: 27  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RQLKVEKWF 203
           MK I+A++ ++IPE +TV V +++VTV+GPRG L RNFKHL +D +++   R+L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 204 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVSPH 314
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR V  H
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAH 97



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 352 NTIIEIRNFLGEKYIRR 402
           NT IEIRNFLGEK +R+
Sbjct: 108 NTAIEIRNFLGEKKVRK 124



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 404 RVKMAPGVTVVNSPKQKDELII 469
           +V M  GVT++ S K KDEL++
Sbjct: 124 KVDMLEGVTILRSEKVKDELVL 145


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  107 bits (256), Expect = 6e-24
 Identities = 47/90 (52%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
 Frame = +3

Query: 54  VKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RQLKVEKWFGSKKELA 224
           ++IP  +TVHV +++VTV+GPRG L RNFKHL +D +++     R+L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 225 AVRTVCSHVENMIKGVTKGFQYKMRAVSPH 314
           A+RT  SHV+N+I GVTKG++YKMR V  H
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAH 90



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 352 NTIIEIRNFLGEKYIRR 402
           NT IEIRNFLGEK +R+
Sbjct: 101 NTAIEIRNFLGEKKVRK 117



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 404 RVKMAPGVTVVNSPKQKDELII 469
           +V M  GVT++ S K KDEL++
Sbjct: 117 KVDMLEGVTILRSEKVKDELVL 138


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 129 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVS 308
           +R+  H   D  +  P Q   + +FGS++  ++   + S +EN + G    F   +R++S
Sbjct: 255 RRDASHYNGDSSIGAPVQNLTDAYFGSRRSFSSTMDIMSQLENKVDG---RFNQNLRSLS 311

Query: 309 -PHSYNMG-YTWGNEGKHNY 362
             HS      ++G  G  NY
Sbjct: 312 FGHSSPPSPASYGQNGLANY 331


>06_03_0970 +
           26424209-26424910,26425053-26425109,26425251-26425478,
           26425788-26425881,26425955-26426161,26426581-26426711,
           26426943-26426992,26427125-26427432,26427548-26427651,
           26427810-26428526,26429159-26429338,26429703-26429831
          Length = 968

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 158 HSHG*SSPVESGEMVRF*KRTSCC*DSMLSCRKHDQRCDQGIPIQD 295
           HS   S+P  + E   F      C +  L C  H+  C  GIP  D
Sbjct: 523 HSKAHSAPAAAAE--HFSASPRKCDNDTLGCSNHEDACQTGIPSND 566


>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +3

Query: 57  KIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRT 236
           K+   +  H++  L+        L  NF      + +++     +     S K+LAAVRT
Sbjct: 545 KLTAPVCEHLQLLLLRNNSSLHELPENFFQSMQQLAVLDMSNSSIHSLLLSTKDLAAVRT 604

Query: 237 VCSHVENMIKGV 272
           +C +   + +G+
Sbjct: 605 LCLNDSKVSRGI 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,094
Number of Sequences: 37544
Number of extensions: 286842
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)