Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H14
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   119   9e-28
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    30   0.73 
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   5.1  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   6.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  119 bits (287), Expect = 9e-28
 Identities = 52/96 (54%), Positives = 72/96 (75%)
 Frame = +3

Query: 27  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 206
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 207 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVSPH 314
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+V  H
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAH 96



 Score = 30.3 bits (65), Expect = 0.73
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 352 NTIIEIRNFLGEKYIRR 402
           N  +EIRNFLGEK +RR
Sbjct: 107 NRTVEIRNFLGEKIVRR 123


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = +3

Query: 144 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRA 302
           H+  D++++  ++  ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKA 418


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 435 TTVTPGAIFTLPPDVLFTKEVTDLNNCVF 349
           TT T     T+PP+ LF   +   NNC+F
Sbjct: 117 TTATGRVSPTIPPETLFHDAIKRCNNCLF 145


>AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical
           protein Y51H1A.2 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +3

Query: 6   RGKQSPNMKQIVANQKVKIPES 71
           +G  S +M+++ +NQK+++P+S
Sbjct: 303 KGSSSSSMRRVASNQKIQLPQS 324


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  WTVRLSGIFTFWFATICFIL 23
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 262 SKV*PRDSNTRCVPCRPIPITWVTRGEMRENTIIEIRNFLGEKYIRREGKN 414
           SK+  +D +     CR    T+V+        ++EI    GE Y   EG+N
Sbjct: 239 SKMSEQDPSNHISFCRDFEYTFVSDWRESSERVVEILQKYGELYQLNEGQN 289


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 277 LVTPLIMFST*EHTVLTAASSFLEPNHFSTFNWRGLTMRMSTAKCL 140
           L  P +++ + + ++LT   SFL   H  T+       R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 C*DSMLSCRKHDQRCDQGIPIQDAC 301
           C DSM++C     +CDQG  +Q  C
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC 44


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 118 RGPFTVTKRDFTWTVRLSGIFTFWFATICFIL 23
           R P    K    WT +   I+TFW  T  +IL
Sbjct: 42  RNPAPGYKAFARWTAKYGDIYTFWLGTRPYIL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,728,894
Number of Sequences: 27780
Number of extensions: 250750
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)