Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H13
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 1.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 3.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 4.8
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 24 6.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 24 6.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 6.3
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 24 6.3
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 24 6.3
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 24 8.3
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 24 8.3
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +3
Query: 192 DGNNEPYFDYRLPNGKICTSESEYGNAYSLARSCPKVQTPEHSHHQMHAALPPACE 359
D N PYF P+ K S+ EY Y L + + SH+ P+ E
Sbjct: 172 DSTNNPYFPDNPPSPKADISKDEYFGKY-LPKKSDTLDMDLESHNMTFHDYEPSIE 226
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 117 CTSKLEVCYFEVNGFYLG 170
C+S E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 49 TYSRSNRPTDVSASALNTD*WPS 117
T+++ + P+DVSAS LN PS
Sbjct: 332 TFNQPSGPSDVSASFLNLQAMPS 354
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.2 bits (50), Expect = 6.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +3
Query: 99 YGLMAFCTSKLEVCYFEVNGFYLGK 173
+ + C+ L VC+ +G ++GK
Sbjct: 155 FSIKTLCSKSLAVCFSVASGLWVGK 179
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 192 DGNNEPYFDYRLPNGKICTSESEYGNAYSLARSCPKVQT 308
DGN Y +R PN + T+ A L+R C K++T
Sbjct: 36 DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 103 PYLEPRPIRPLVCLNANTSFSMTGKPRLVPNTS 5
P PRPI P+ + N + + T KP L P +S
Sbjct: 268 PNSPPRPIAPV---SMNPAINSTSKPPLPPPSS 297
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 7 KYSARGAASLSLRRTYSRSNRPTDVSASALNTD*WP 114
KYS GA + + + S +RP+++S S T +P
Sbjct: 128 KYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYP 163
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 168 GKLRGLLGDGNNEPYFDYRLPN 233
G + +LGD + +P+F +RL N
Sbjct: 77 GDMISVLGDASGQPFFLHRLLN 98
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 23.8 bits (49), Expect = 8.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +1
Query: 208 HTLTTDYLTERSAHLRVNMATHIA--WRAA--VLKSRL---PSTPTTRCTLLC 345
H ++ D LT+ + N+ T IA W + K L P+ PTT+C L C
Sbjct: 45 HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNC 97
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 225 LPNGKICTSESEYGNAYSLARSCPKVQTPEHSHHQMHA 338
+P+G+ S S ++ L + P V P H H +H+
Sbjct: 58 IPHGRYTWSTSPDTDSSHLPSTPPTVDIPFHHPHTIHS 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,321
Number of Sequences: 5004
Number of extensions: 26645
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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