Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H13
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0037 - 7613632-7613727,7614452-7615507 33 0.091
02_04_0510 + 23558111-23559613 27 3.4
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923... 27 4.5
08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625... 27 6.0
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784... 27 6.0
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 27 6.0
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 6.0
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 27 6.0
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 26 7.9
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 207 PYFDYRLPNGKICTSESEYGNAYSLARSC-PKVQTPEHSHHQMHAALPP 350
P+ ++ G + YG AY+ AR+ P P H HH H + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>02_04_0510 + 23558111-23559613
Length = 500
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 201 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 97
CY+ R+D + + + +S KP + Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404
>10_08_0955 +
21789616-21789778,21791622-21791688,21792285-21792346,
21792508-21792729,21792993-21793102,21793195-21793236,
21793271-21793303
Length = 232
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 114 FCTSKLEVCYFEVNGFYLGKLRGLLGDGNNEPYFDYRLPNGKICTSESEYGNAYS 278
FC+ + + E++ Y+ L G N PY+DY L I ES G+ ++
Sbjct: 124 FCSLRGNEFFCEIDDDYIQDDFNLCGLSNQVPYYDYAL--DLILDIESSNGDVFT 176
>08_02_0924 -
22660615-22660623,22661035-22661193,22661664-22662539,
22663009-22663119,22663528-22663556,22663690-22663762,
22664804-22665100,22665193-22665345,22665979-22666068,
22667520-22667809,22667860-22668349
Length = 858
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 174 LRGLLGDGNNEPYFDYRLPNGKICTSESEYGNAYSLARSCPKVQT 308
LR + DGN + R PN K T ES+Y + + P +QT
Sbjct: 185 LRSVCTDGNQMDEWVIRAPNLKHLTIESDYDYLWRV-EELPSLQT 228
>08_02_0575 -
18876988-18877029,18877072-18877102,18878290-18878418,
18878512-18879154,18882042-18883990,18884964-18885040
Length = 956
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 207 PYFDYRLPNGKICTSESEYGNAYSLARSCPKVQTPEHSHHQM 332
P Y + G + + E E N L +CP++ T +H H M
Sbjct: 412 PNLGYFVDAGSVQSIE-ELTNLQDLQLACPQIATSDHIKHNM 452
>07_03_1339 + 25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 136 TSSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTGKP 26
+S+ + ++N + P + L+ LN+NTSF +GKP
Sbjct: 1264 SSNSSLMDSVNTAIMPSSLDNLL-LNSNTSFLYSGKP 1299
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 249 SESEYGNAYSLARSCPKVQTPEHSHHQMHAALPP 350
S EYG + S + P+H HH H PP
Sbjct: 40 SRYEYGGGGYESHSHHQYHLPDHHHHHHHHHPPP 73
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 171 KLRGLLGDGNNEPYFDYRLPNGKICTSESEYGNAYS 278
KLR +LG G + +D + + K C +Y YS
Sbjct: 379 KLRSILGSGMSNKMWDILVEHAKTCVLSGKYYIYYS 414
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 136 TSSLEVQKAINPYLEPRPIRPLVCLNANTSFS 41
TS V + +NPYLE ++PLV +FS
Sbjct: 335 TSDGSVLEKLNPYLESGKVKPLVDPKGPFAFS 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,753
Number of Sequences: 37544
Number of extensions: 189310
Number of successful extensions: 577
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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